Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC18.65■□□□□ 0.58
FOXA2Q9Y261 AC074183.2-201ENST00000623112 922 ntBASIC18.65■□□□□ 0.58
FOXA2Q9Y261 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
FOXA2Q9Y261 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
FOXA2Q9Y261 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC18.65■□□□□ 0.58
FOXA2Q9Y261 AC012676.1-201ENST00000574705 1949 ntBASIC18.64■□□□□ 0.58
FOXA2Q9Y261 CASK-201ENST00000378154 2494 ntTSL 5 BASIC18.64■□□□□ 0.58
FOXA2Q9Y261 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
FOXA2Q9Y261 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC18.64■□□□□ 0.57
FOXA2Q9Y261 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
FOXA2Q9Y261 DUSP8P5-201ENST00000422884 1815 ntBASIC18.64■□□□□ 0.57
FOXA2Q9Y261 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
FOXA2Q9Y261 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
FOXA2Q9Y261 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
FOXA2Q9Y261 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
FOXA2Q9Y261 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
FOXA2Q9Y261 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC18.64■□□□□ 0.57
FOXA2Q9Y261 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
FOXA2Q9Y261 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
FOXA2Q9Y261 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
FOXA2Q9Y261 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
FOXA2Q9Y261 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC18.63■□□□□ 0.57
FOXA2Q9Y261 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
FOXA2Q9Y261 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC18.63■□□□□ 0.57
FOXA2Q9Y261 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC18.63■□□□□ 0.57
FOXA2Q9Y261 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
FOXA2Q9Y261 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC18.63■□□□□ 0.57
FOXA2Q9Y261 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC18.63■□□□□ 0.57
FOXA2Q9Y261 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
FOXA2Q9Y261 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
FOXA2Q9Y261 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
FOXA2Q9Y261 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC18.62■□□□□ 0.57
FOXA2Q9Y261 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
FOXA2Q9Y261 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
FOXA2Q9Y261 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
FOXA2Q9Y261 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
FOXA2Q9Y261 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
FOXA2Q9Y261 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
FOXA2Q9Y261 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC18.61■□□□□ 0.57
FOXA2Q9Y261 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC18.61■□□□□ 0.57
FOXA2Q9Y261 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC18.61■□□□□ 0.57
FOXA2Q9Y261 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC18.61■□□□□ 0.57
FOXA2Q9Y261 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
FOXA2Q9Y261 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
FOXA2Q9Y261 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
FOXA2Q9Y261 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
FOXA2Q9Y261 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC18.61■□□□□ 0.57
FOXA2Q9Y261 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC18.61■□□□□ 0.57
FOXA2Q9Y261 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
FOXA2Q9Y261 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
FOXA2Q9Y261 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
FOXA2Q9Y261 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC18.6■□□□□ 0.57
FOXA2Q9Y261 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
FOXA2Q9Y261 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
FOXA2Q9Y261 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
FOXA2Q9Y261 MTX2-204ENST00000443241 799 ntTSL 3 BASIC18.6■□□□□ 0.57
FOXA2Q9Y261 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
FOXA2Q9Y261 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC18.6■□□□□ 0.57
FOXA2Q9Y261 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
FOXA2Q9Y261 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
FOXA2Q9Y261 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
FOXA2Q9Y261 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC18.59■□□□□ 0.57
FOXA2Q9Y261 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
FOXA2Q9Y261 LONRF2P2-201ENST00000439212 571 ntBASIC18.59■□□□□ 0.57
FOXA2Q9Y261 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC18.59■□□□□ 0.57
FOXA2Q9Y261 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
FOXA2Q9Y261 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC18.59■□□□□ 0.57
FOXA2Q9Y261 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
FOXA2Q9Y261 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
FOXA2Q9Y261 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
FOXA2Q9Y261 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC18.58■□□□□ 0.57
FOXA2Q9Y261 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.57
FOXA2Q9Y261 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
FOXA2Q9Y261 AC068473.5-201ENST00000616428 2072 ntBASIC18.58■□□□□ 0.57
FOXA2Q9Y261 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
FOXA2Q9Y261 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
FOXA2Q9Y261 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC18.58■□□□□ 0.56
FOXA2Q9Y261 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC18.58■□□□□ 0.56
FOXA2Q9Y261 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC18.58■□□□□ 0.56
FOXA2Q9Y261 AC019171.1-201ENST00000601251 1056 ntBASIC18.58■□□□□ 0.56
FOXA2Q9Y261 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
FOXA2Q9Y261 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC18.58■□□□□ 0.56
FOXA2Q9Y261 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC18.58■□□□□ 0.56
FOXA2Q9Y261 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
FOXA2Q9Y261 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
FOXA2Q9Y261 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
FOXA2Q9Y261 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
FOXA2Q9Y261 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
FOXA2Q9Y261 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
FOXA2Q9Y261 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
FOXA2Q9Y261 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
FOXA2Q9Y261 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
FOXA2Q9Y261 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC18.57■□□□□ 0.56
FOXA2Q9Y261 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC18.57■□□□□ 0.56
FOXA2Q9Y261 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC18.57■□□□□ 0.56
FOXA2Q9Y261 AC010980.1-201ENST00000587192 1142 ntBASIC18.57■□□□□ 0.56
FOXA2Q9Y261 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
FOXA2Q9Y261 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC18.57■□□□□ 0.56
FOXA2Q9Y261 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
FOXA2Q9Y261 AC133561.1-201ENST00000568600 2415 ntBASIC18.57■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 19.6 ms