Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CHMP1AQ9HD42 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CHMP1AQ9HD42 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
CHMP1AQ9HD42 RPS2-202ENST00000526522 924 ntTSL 2 BASIC19.73■□□□□ 0.75
CHMP1AQ9HD42 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC19.73■□□□□ 0.75
CHMP1AQ9HD42 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CHMP1AQ9HD42 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CHMP1AQ9HD42 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CHMP1AQ9HD42 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
CHMP1AQ9HD42 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
CHMP1AQ9HD42 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CHMP1AQ9HD42 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC19.72■□□□□ 0.75
CHMP1AQ9HD42 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
CHMP1AQ9HD42 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CHMP1AQ9HD42 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
CHMP1AQ9HD42 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CHMP1AQ9HD42 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CHMP1AQ9HD42 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CHMP1AQ9HD42 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
CHMP1AQ9HD42 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
CHMP1AQ9HD42 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
CHMP1AQ9HD42 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CHMP1AQ9HD42 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC19.71■□□□□ 0.75
CHMP1AQ9HD42 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
CHMP1AQ9HD42 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
CHMP1AQ9HD42 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC19.71■□□□□ 0.75
CHMP1AQ9HD42 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
CHMP1AQ9HD42 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CHMP1AQ9HD42 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CHMP1AQ9HD42 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC19.71■□□□□ 0.75
CHMP1AQ9HD42 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
CHMP1AQ9HD42 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC19.7■□□□□ 0.74
CHMP1AQ9HD42 SRP68-213ENST00000629930 165 ntTSL 5 BASIC19.7■□□□□ 0.74
CHMP1AQ9HD42 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CHMP1AQ9HD42 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
CHMP1AQ9HD42 LSR-205ENST00000427250 1606 ntTSL 2 BASIC19.69■□□□□ 0.74
CHMP1AQ9HD42 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
CHMP1AQ9HD42 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC19.69■□□□□ 0.74
CHMP1AQ9HD42 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC19.69■□□□□ 0.74
CHMP1AQ9HD42 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC19.69■□□□□ 0.74
CHMP1AQ9HD42 MIR6089-201ENST00000616698 64 ntBASIC19.69■□□□□ 0.74
CHMP1AQ9HD42 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CHMP1AQ9HD42 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC19.69■□□□□ 0.74
CHMP1AQ9HD42 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC19.68■□□□□ 0.74
CHMP1AQ9HD42 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CHMP1AQ9HD42 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC19.68■□□□□ 0.74
CHMP1AQ9HD42 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CHMP1AQ9HD42 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
CHMP1AQ9HD42 AC007029.1-201ENST00000604183 313 ntBASIC19.68■□□□□ 0.74
CHMP1AQ9HD42 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
CHMP1AQ9HD42 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC19.68■□□□□ 0.74
CHMP1AQ9HD42 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CHMP1AQ9HD42 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CHMP1AQ9HD42 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC19.68■□□□□ 0.74
CHMP1AQ9HD42 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CHMP1AQ9HD42 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
CHMP1AQ9HD42 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CHMP1AQ9HD42 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
CHMP1AQ9HD42 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CHMP1AQ9HD42 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CHMP1AQ9HD42 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CHMP1AQ9HD42 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC19.67■□□□□ 0.74
CHMP1AQ9HD42 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CHMP1AQ9HD42 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CHMP1AQ9HD42 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
CHMP1AQ9HD42 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CHMP1AQ9HD42 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC19.67■□□□□ 0.74
CHMP1AQ9HD42 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CHMP1AQ9HD42 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC19.66■□□□□ 0.74
CHMP1AQ9HD42 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CHMP1AQ9HD42 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC19.66■□□□□ 0.74
CHMP1AQ9HD42 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
CHMP1AQ9HD42 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC19.66■□□□□ 0.74
CHMP1AQ9HD42 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CHMP1AQ9HD42 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
CHMP1AQ9HD42 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CHMP1AQ9HD42 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CHMP1AQ9HD42 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
CHMP1AQ9HD42 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CHMP1AQ9HD42 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CHMP1AQ9HD42 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CHMP1AQ9HD42 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CHMP1AQ9HD42 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CHMP1AQ9HD42 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CHMP1AQ9HD42 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC19.65■□□□□ 0.74
CHMP1AQ9HD42 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CHMP1AQ9HD42 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CHMP1AQ9HD42 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
CHMP1AQ9HD42 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
CHMP1AQ9HD42 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
CHMP1AQ9HD42 KRT18P10-201ENST00000388836 1287 ntBASIC19.64■□□□□ 0.73
CHMP1AQ9HD42 HES4-202ENST00000428771 1040 ntTSL 2 BASIC19.64■□□□□ 0.73
CHMP1AQ9HD42 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC19.64■□□□□ 0.73
CHMP1AQ9HD42 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
CHMP1AQ9HD42 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
CHMP1AQ9HD42 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC19.64■□□□□ 0.73
CHMP1AQ9HD42 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC19.63■□□□□ 0.73
CHMP1AQ9HD42 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CHMP1AQ9HD42 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC19.63■□□□□ 0.73
CHMP1AQ9HD42 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms