Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC29.68■■■□□ 2.34
USP42Q9H9J4 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC29.68■■■□□ 2.34
USP42Q9H9J4 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC29.67■■■□□ 2.34
USP42Q9H9J4 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC29.67■■■□□ 2.34
USP42Q9H9J4 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC29.67■■■□□ 2.34
USP42Q9H9J4 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC29.67■■■□□ 2.34
USP42Q9H9J4 GATM-206ENST00000558336 1522 ntTSL 2 BASIC29.67■■■□□ 2.34
USP42Q9H9J4 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC29.67■■■□□ 2.34
USP42Q9H9J4 AL136967.2-201ENST00000623968 743 ntBASIC29.67■■■□□ 2.34
USP42Q9H9J4 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC29.67■■■□□ 2.34
USP42Q9H9J4 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC29.67■■■□□ 2.34
USP42Q9H9J4 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC29.66■■■□□ 2.34
USP42Q9H9J4 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC29.65■■■□□ 2.34
USP42Q9H9J4 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC29.65■■■□□ 2.34
USP42Q9H9J4 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC29.65■■■□□ 2.34
USP42Q9H9J4 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC29.65■■■□□ 2.34
USP42Q9H9J4 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC29.65■■■□□ 2.34
USP42Q9H9J4 AF213884.3-201ENST00000563833 479 ntBASIC29.65■■■□□ 2.34
USP42Q9H9J4 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC29.65■■■□□ 2.34
USP42Q9H9J4 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC29.65■■■□□ 2.34
USP42Q9H9J4 ERN1-208ENST00000606895 2068 ntBASIC29.65■■■□□ 2.34
USP42Q9H9J4 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC29.64■■■□□ 2.34
USP42Q9H9J4 AC010501.1-201ENST00000606270 1962 ntBASIC29.64■■■□□ 2.34
USP42Q9H9J4 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC29.64■■■□□ 2.34
USP42Q9H9J4 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC29.64■■■□□ 2.34
USP42Q9H9J4 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC29.64■■■□□ 2.34
USP42Q9H9J4 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC29.63■■■□□ 2.33
USP42Q9H9J4 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC29.63■■■□□ 2.33
USP42Q9H9J4 MIR939-201ENST00000401314 82 ntBASIC29.63■■■□□ 2.33
USP42Q9H9J4 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC29.63■■■□□ 2.33
USP42Q9H9J4 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC29.63■■■□□ 2.33
USP42Q9H9J4 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC29.62■■■□□ 2.33
USP42Q9H9J4 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC29.62■■■□□ 2.33
USP42Q9H9J4 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC29.62■■■□□ 2.33
USP42Q9H9J4 AP001330.3-201ENST00000520123 633 ntBASIC29.62■■■□□ 2.33
USP42Q9H9J4 GRAMD4P4-201ENST00000613563 1115 ntBASIC29.62■■■□□ 2.33
USP42Q9H9J4 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC29.61■■■□□ 2.33
USP42Q9H9J4 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC29.61■■■□□ 2.33
USP42Q9H9J4 SHF-207ENST00000560540 2062 ntTSL 5 BASIC29.6■■■□□ 2.33
USP42Q9H9J4 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC29.6■■■□□ 2.33
USP42Q9H9J4 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC29.6■■■□□ 2.33
USP42Q9H9J4 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC29.6■■■□□ 2.33
USP42Q9H9J4 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC29.6■■■□□ 2.33
USP42Q9H9J4 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC29.6■■■□□ 2.33
USP42Q9H9J4 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC29.59■■■□□ 2.33
USP42Q9H9J4 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC29.59■■■□□ 2.33
USP42Q9H9J4 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC29.59■■■□□ 2.33
USP42Q9H9J4 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC29.59■■■□□ 2.33
USP42Q9H9J4 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC29.59■■■□□ 2.33
USP42Q9H9J4 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC29.58■■■□□ 2.33
USP42Q9H9J4 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC29.58■■■□□ 2.33
USP42Q9H9J4 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC29.58■■■□□ 2.33
USP42Q9H9J4 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC29.58■■■□□ 2.33
USP42Q9H9J4 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC29.58■■■□□ 2.33
USP42Q9H9J4 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC29.58■■■□□ 2.33
USP42Q9H9J4 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC29.57■■■□□ 2.32
USP42Q9H9J4 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC29.57■■■□□ 2.32
USP42Q9H9J4 AC004448.1-201ENST00000458332 883 ntBASIC29.57■■■□□ 2.32
USP42Q9H9J4 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC29.57■■■□□ 2.32
USP42Q9H9J4 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC29.57■■■□□ 2.32
USP42Q9H9J4 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC29.57■■■□□ 2.32
USP42Q9H9J4 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC29.57■■■□□ 2.32
USP42Q9H9J4 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC29.57■■■□□ 2.32
USP42Q9H9J4 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC29.56■■■□□ 2.32
USP42Q9H9J4 AC096887.2-201ENST00000623443 1957 ntBASIC29.56■■■□□ 2.32
USP42Q9H9J4 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC29.56■■■□□ 2.32
USP42Q9H9J4 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC29.56■■■□□ 2.32
USP42Q9H9J4 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC29.56■■■□□ 2.32
USP42Q9H9J4 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC29.56■■■□□ 2.32
USP42Q9H9J4 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC29.56■■■□□ 2.32
USP42Q9H9J4 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC29.55■■■□□ 2.32
USP42Q9H9J4 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC29.55■■■□□ 2.32
USP42Q9H9J4 ANKRD20A6P-201ENST00000618763 204 ntBASIC29.55■■■□□ 2.32
USP42Q9H9J4 SF1-220ENST00000626028 704 ntTSL 2 BASIC29.55■■■□□ 2.32
USP42Q9H9J4 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC29.55■■■□□ 2.32
USP42Q9H9J4 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC29.55■■■□□ 2.32
USP42Q9H9J4 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC29.55■■■□□ 2.32
USP42Q9H9J4 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC29.55■■■□□ 2.32
USP42Q9H9J4 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC29.54■■■□□ 2.32
USP42Q9H9J4 MIR6821-201ENST00000617625 74 ntBASIC29.54■■■□□ 2.32
USP42Q9H9J4 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC29.54■■■□□ 2.32
USP42Q9H9J4 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC29.54■■■□□ 2.32
USP42Q9H9J4 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC29.53■■■□□ 2.32
USP42Q9H9J4 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC29.53■■■□□ 2.32
USP42Q9H9J4 DUX4L19-201ENST00000557448 1267 ntBASIC29.53■■■□□ 2.32
USP42Q9H9J4 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC29.53■■■□□ 2.32
USP42Q9H9J4 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC29.52■■■□□ 2.32
USP42Q9H9J4 RBM38-205ENST00000440234 686 ntTSL 2 BASIC29.52■■■□□ 2.32
USP42Q9H9J4 AC091305.1-201ENST00000479476 895 ntBASIC29.52■■■□□ 2.32
USP42Q9H9J4 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC29.52■■■□□ 2.32
USP42Q9H9J4 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC29.52■■■□□ 2.32
USP42Q9H9J4 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC29.52■■■□□ 2.32
USP42Q9H9J4 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC29.52■■■□□ 2.32
USP42Q9H9J4 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC29.52■■■□□ 2.32
USP42Q9H9J4 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC29.52■■■□□ 2.32
USP42Q9H9J4 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC29.52■■■□□ 2.32
USP42Q9H9J4 STOX2-205ENST00000513034 807 ntTSL 3 BASIC29.51■■■□□ 2.32
USP42Q9H9J4 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC29.5■■■□□ 2.31
USP42Q9H9J4 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC29.5■■■□□ 2.31
USP42Q9H9J4 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC29.5■■■□□ 2.31
Retrieved 100 of 98,524 protein–RNA pairs in 63.8 ms