Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC30.79■■■□□ 2.52
USHBP1Q8N6Y0 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC30.79■■■□□ 2.52
USHBP1Q8N6Y0 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC30.79■■■□□ 2.52
USHBP1Q8N6Y0 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC30.79■■■□□ 2.52
USHBP1Q8N6Y0 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC30.78■■■□□ 2.52
USHBP1Q8N6Y0 AC131274.2-201ENST00000580697 1507 ntBASIC30.78■■■□□ 2.52
USHBP1Q8N6Y0 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC30.78■■■□□ 2.52
USHBP1Q8N6Y0 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC30.78■■■□□ 2.52
USHBP1Q8N6Y0 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC30.78■■■□□ 2.52
USHBP1Q8N6Y0 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC30.78■■■□□ 2.52
USHBP1Q8N6Y0 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC30.78■■■□□ 2.52
USHBP1Q8N6Y0 GATM-206ENST00000558336 1522 ntTSL 2 BASIC30.78■■■□□ 2.52
USHBP1Q8N6Y0 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
USHBP1Q8N6Y0 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC30.78■■■□□ 2.52
USHBP1Q8N6Y0 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC30.77■■■□□ 2.52
USHBP1Q8N6Y0 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC30.76■■■□□ 2.52
USHBP1Q8N6Y0 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC30.76■■■□□ 2.51
USHBP1Q8N6Y0 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC30.76■■■□□ 2.51
USHBP1Q8N6Y0 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC30.76■■■□□ 2.51
USHBP1Q8N6Y0 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
USHBP1Q8N6Y0 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
USHBP1Q8N6Y0 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC30.75■■■□□ 2.51
USHBP1Q8N6Y0 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC30.75■■■□□ 2.51
USHBP1Q8N6Y0 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC30.75■■■□□ 2.51
USHBP1Q8N6Y0 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC30.75■■■□□ 2.51
USHBP1Q8N6Y0 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC30.75■■■□□ 2.51
USHBP1Q8N6Y0 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC30.75■■■□□ 2.51
USHBP1Q8N6Y0 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC30.75■■■□□ 2.51
USHBP1Q8N6Y0 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC30.75■■■□□ 2.51
USHBP1Q8N6Y0 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC30.74■■■□□ 2.51
USHBP1Q8N6Y0 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC30.74■■■□□ 2.51
USHBP1Q8N6Y0 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC30.74■■■□□ 2.51
USHBP1Q8N6Y0 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC30.73■■■□□ 2.51
USHBP1Q8N6Y0 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
USHBP1Q8N6Y0 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC30.73■■■□□ 2.51
USHBP1Q8N6Y0 RARRES2P6-201ENST00000567333 442 ntBASIC30.73■■■□□ 2.51
USHBP1Q8N6Y0 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC30.73■■■□□ 2.51
USHBP1Q8N6Y0 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC30.73■■■□□ 2.51
USHBP1Q8N6Y0 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC30.73■■■□□ 2.51
USHBP1Q8N6Y0 AC005703.6-201ENST00000623265 1329 ntBASIC30.73■■■□□ 2.51
USHBP1Q8N6Y0 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC30.72■■■□□ 2.51
USHBP1Q8N6Y0 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC30.72■■■□□ 2.51
USHBP1Q8N6Y0 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.51
USHBP1Q8N6Y0 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
USHBP1Q8N6Y0 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC30.71■■■□□ 2.51
USHBP1Q8N6Y0 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC30.71■■■□□ 2.51
USHBP1Q8N6Y0 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC30.71■■■□□ 2.51
USHBP1Q8N6Y0 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC30.71■■■□□ 2.51
USHBP1Q8N6Y0 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC30.71■■■□□ 2.51
USHBP1Q8N6Y0 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC30.71■■■□□ 2.51
USHBP1Q8N6Y0 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC30.71■■■□□ 2.51
USHBP1Q8N6Y0 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC30.7■■■□□ 2.51
USHBP1Q8N6Y0 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.51
USHBP1Q8N6Y0 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC30.7■■■□□ 2.51
USHBP1Q8N6Y0 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC30.7■■■□□ 2.51
USHBP1Q8N6Y0 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.51
USHBP1Q8N6Y0 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC30.7■■■□□ 2.5
USHBP1Q8N6Y0 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC30.7■■■□□ 2.5
USHBP1Q8N6Y0 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC30.69■■■□□ 2.5
USHBP1Q8N6Y0 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC30.69■■■□□ 2.5
USHBP1Q8N6Y0 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC30.68■■■□□ 2.5
USHBP1Q8N6Y0 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC30.68■■■□□ 2.5
USHBP1Q8N6Y0 REST-206ENST00000612429 1376 ntTSL 5 BASIC30.68■■■□□ 2.5
USHBP1Q8N6Y0 REST-207ENST00000616975 1370 ntTSL 5 BASIC30.68■■■□□ 2.5
USHBP1Q8N6Y0 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
USHBP1Q8N6Y0 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC30.68■■■□□ 2.5
USHBP1Q8N6Y0 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC30.68■■■□□ 2.5
USHBP1Q8N6Y0 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC30.67■■■□□ 2.5
USHBP1Q8N6Y0 HYI-206ENST00000372434 1025 ntTSL 5 BASIC30.67■■■□□ 2.5
USHBP1Q8N6Y0 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC30.67■■■□□ 2.5
USHBP1Q8N6Y0 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
USHBP1Q8N6Y0 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC30.67■■■□□ 2.5
USHBP1Q8N6Y0 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC30.67■■■□□ 2.5
USHBP1Q8N6Y0 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC30.67■■■□□ 2.5
USHBP1Q8N6Y0 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC30.67■■■□□ 2.5
USHBP1Q8N6Y0 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC30.67■■■□□ 2.5
USHBP1Q8N6Y0 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC30.66■■■□□ 2.5
USHBP1Q8N6Y0 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
USHBP1Q8N6Y0 EDA-201ENST00000338901 1233 ntBASIC30.66■■■□□ 2.5
USHBP1Q8N6Y0 AC026271.2-201ENST00000428091 497 ntBASIC30.66■■■□□ 2.5
USHBP1Q8N6Y0 AF213884.3-201ENST00000563833 479 ntBASIC30.66■■■□□ 2.5
USHBP1Q8N6Y0 GRAMD4P4-201ENST00000613563 1115 ntBASIC30.66■■■□□ 2.5
USHBP1Q8N6Y0 AL355001.2-201ENST00000620617 1191 ntBASIC30.66■■■□□ 2.5
USHBP1Q8N6Y0 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC30.66■■■□□ 2.5
USHBP1Q8N6Y0 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
USHBP1Q8N6Y0 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
USHBP1Q8N6Y0 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC30.65■■■□□ 2.5
USHBP1Q8N6Y0 LGR4-203ENST00000480977 492 ntTSL 2 BASIC30.65■■■□□ 2.5
USHBP1Q8N6Y0 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
USHBP1Q8N6Y0 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC30.65■■■□□ 2.5
USHBP1Q8N6Y0 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC30.65■■■□□ 2.5
USHBP1Q8N6Y0 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC30.65■■■□□ 2.5
USHBP1Q8N6Y0 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC30.65■■■□□ 2.5
USHBP1Q8N6Y0 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC30.65■■■□□ 2.5
USHBP1Q8N6Y0 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
USHBP1Q8N6Y0 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC30.64■■■□□ 2.5
USHBP1Q8N6Y0 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC30.64■■■□□ 2.5
USHBP1Q8N6Y0 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC30.64■■■□□ 2.5
USHBP1Q8N6Y0 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC30.64■■■□□ 2.5
USHBP1Q8N6Y0 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC30.64■■■□□ 2.5
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms