Protein–RNA interactions for Protein: Q8IYX3

CCDC116, Coiled-coil domain-containing protein 116, humanhuman

Predictions only

Length 515 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC116Q8IYX3 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CCDC116Q8IYX3 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC21.76■■□□□ 1.07
CCDC116Q8IYX3 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC21.76■■□□□ 1.07
CCDC116Q8IYX3 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
CCDC116Q8IYX3 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
CCDC116Q8IYX3 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CCDC116Q8IYX3 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
CCDC116Q8IYX3 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CCDC116Q8IYX3 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC21.75■■□□□ 1.07
CCDC116Q8IYX3 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CCDC116Q8IYX3 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC21.74■■□□□ 1.07
CCDC116Q8IYX3 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
CCDC116Q8IYX3 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CCDC116Q8IYX3 YBX1P4-201ENST00000392794 808 ntBASIC21.74■■□□□ 1.07
CCDC116Q8IYX3 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CCDC116Q8IYX3 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC21.74■■□□□ 1.07
CCDC116Q8IYX3 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC21.74■■□□□ 1.07
CCDC116Q8IYX3 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
CCDC116Q8IYX3 THA1P-201ENST00000590384 1145 ntBASIC21.74■■□□□ 1.07
CCDC116Q8IYX3 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CCDC116Q8IYX3 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
CCDC116Q8IYX3 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
CCDC116Q8IYX3 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CCDC116Q8IYX3 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
CCDC116Q8IYX3 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC21.73■■□□□ 1.07
CCDC116Q8IYX3 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CCDC116Q8IYX3 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CCDC116Q8IYX3 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC21.73■■□□□ 1.07
CCDC116Q8IYX3 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
CCDC116Q8IYX3 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
CCDC116Q8IYX3 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
CCDC116Q8IYX3 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
CCDC116Q8IYX3 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
CCDC116Q8IYX3 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CCDC116Q8IYX3 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC21.72■■□□□ 1.07
CCDC116Q8IYX3 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC21.72■■□□□ 1.07
CCDC116Q8IYX3 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CCDC116Q8IYX3 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC21.72■■□□□ 1.07
CCDC116Q8IYX3 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC21.72■■□□□ 1.07
CCDC116Q8IYX3 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC21.72■■□□□ 1.07
CCDC116Q8IYX3 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC21.72■■□□□ 1.07
CCDC116Q8IYX3 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CCDC116Q8IYX3 SHD-204ENST00000599689 1729 ntTSL 5 BASIC21.72■■□□□ 1.07
CCDC116Q8IYX3 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
CCDC116Q8IYX3 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC21.71■■□□□ 1.07
CCDC116Q8IYX3 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
CCDC116Q8IYX3 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
CCDC116Q8IYX3 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
CCDC116Q8IYX3 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CCDC116Q8IYX3 ABCB10P4-201ENST00000566803 2184 ntBASIC21.71■■□□□ 1.07
CCDC116Q8IYX3 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC21.71■■□□□ 1.07
CCDC116Q8IYX3 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CCDC116Q8IYX3 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
CCDC116Q8IYX3 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
CCDC116Q8IYX3 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC21.69■■□□□ 1.06
CCDC116Q8IYX3 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CCDC116Q8IYX3 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
CCDC116Q8IYX3 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC21.69■■□□□ 1.06
CCDC116Q8IYX3 AC103724.3-201ENST00000564481 992 ntBASIC21.69■■□□□ 1.06
CCDC116Q8IYX3 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CCDC116Q8IYX3 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC21.69■■□□□ 1.06
CCDC116Q8IYX3 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
CCDC116Q8IYX3 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC21.69■■□□□ 1.06
CCDC116Q8IYX3 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC21.68■■□□□ 1.06
CCDC116Q8IYX3 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC21.68■■□□□ 1.06
CCDC116Q8IYX3 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
CCDC116Q8IYX3 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CCDC116Q8IYX3 MIR4281-201ENST00000580852 62 ntBASIC21.68■■□□□ 1.06
CCDC116Q8IYX3 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC21.68■■□□□ 1.06
CCDC116Q8IYX3 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CCDC116Q8IYX3 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
CCDC116Q8IYX3 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CCDC116Q8IYX3 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC21.68■■□□□ 1.06
CCDC116Q8IYX3 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CCDC116Q8IYX3 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC21.67■■□□□ 1.06
CCDC116Q8IYX3 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CCDC116Q8IYX3 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
CCDC116Q8IYX3 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
CCDC116Q8IYX3 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
CCDC116Q8IYX3 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC21.67■■□□□ 1.06
CCDC116Q8IYX3 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CCDC116Q8IYX3 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
CCDC116Q8IYX3 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
CCDC116Q8IYX3 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CCDC116Q8IYX3 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC21.66■■□□□ 1.06
CCDC116Q8IYX3 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC21.66■■□□□ 1.06
CCDC116Q8IYX3 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CCDC116Q8IYX3 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
CCDC116Q8IYX3 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
CCDC116Q8IYX3 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC21.65■■□□□ 1.06
CCDC116Q8IYX3 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
CCDC116Q8IYX3 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC21.65■■□□□ 1.06
CCDC116Q8IYX3 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC21.65■■□□□ 1.06
CCDC116Q8IYX3 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC21.65■■□□□ 1.06
CCDC116Q8IYX3 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC21.65■■□□□ 1.06
CCDC116Q8IYX3 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CCDC116Q8IYX3 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
CCDC116Q8IYX3 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.06
CCDC116Q8IYX3 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
CCDC116Q8IYX3 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 102.4 ms