Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC26.8■■□□□ 1.88
CCDC144BQ3MJ40 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC26.8■■□□□ 1.88
CCDC144BQ3MJ40 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC26.8■■□□□ 1.88
CCDC144BQ3MJ40 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
CCDC144BQ3MJ40 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
CCDC144BQ3MJ40 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
CCDC144BQ3MJ40 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
CCDC144BQ3MJ40 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC26.79■■□□□ 1.88
CCDC144BQ3MJ40 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC26.79■■□□□ 1.88
CCDC144BQ3MJ40 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
CCDC144BQ3MJ40 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC26.78■■□□□ 1.88
CCDC144BQ3MJ40 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC26.78■■□□□ 1.88
CCDC144BQ3MJ40 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC26.78■■□□□ 1.88
CCDC144BQ3MJ40 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC26.78■■□□□ 1.88
CCDC144BQ3MJ40 AL117332.1-201ENST00000622628 974 ntBASIC26.78■■□□□ 1.88
CCDC144BQ3MJ40 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC26.78■■□□□ 1.88
CCDC144BQ3MJ40 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC26.78■■□□□ 1.88
CCDC144BQ3MJ40 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC26.78■■□□□ 1.88
CCDC144BQ3MJ40 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC26.78■■□□□ 1.88
CCDC144BQ3MJ40 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC26.78■■□□□ 1.88
CCDC144BQ3MJ40 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC26.77■■□□□ 1.88
CCDC144BQ3MJ40 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
CCDC144BQ3MJ40 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC26.77■■□□□ 1.88
CCDC144BQ3MJ40 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
CCDC144BQ3MJ40 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC26.77■■□□□ 1.88
CCDC144BQ3MJ40 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC26.77■■□□□ 1.88
CCDC144BQ3MJ40 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
CCDC144BQ3MJ40 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC26.77■■□□□ 1.88
CCDC144BQ3MJ40 MTDHP2-201ENST00000601468 714 ntBASIC26.77■■□□□ 1.88
CCDC144BQ3MJ40 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC26.77■■□□□ 1.88
CCDC144BQ3MJ40 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC26.77■■□□□ 1.88
CCDC144BQ3MJ40 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
CCDC144BQ3MJ40 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
CCDC144BQ3MJ40 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC26.76■■□□□ 1.88
CCDC144BQ3MJ40 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
CCDC144BQ3MJ40 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC26.76■■□□□ 1.87
CCDC144BQ3MJ40 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC26.76■■□□□ 1.87
CCDC144BQ3MJ40 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC26.76■■□□□ 1.87
CCDC144BQ3MJ40 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC26.76■■□□□ 1.87
CCDC144BQ3MJ40 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC26.76■■□□□ 1.87
CCDC144BQ3MJ40 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
CCDC144BQ3MJ40 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC26.75■■□□□ 1.87
CCDC144BQ3MJ40 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC26.75■■□□□ 1.87
CCDC144BQ3MJ40 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC26.75■■□□□ 1.87
CCDC144BQ3MJ40 LSM4-201ENST00000252816 986 ntTSL 2 BASIC26.75■■□□□ 1.87
CCDC144BQ3MJ40 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC26.75■■□□□ 1.87
CCDC144BQ3MJ40 MIR3621-201ENST00000580529 85 ntBASIC26.75■■□□□ 1.87
CCDC144BQ3MJ40 AL139246.5-201ENST00000606645 996 ntBASIC26.75■■□□□ 1.87
CCDC144BQ3MJ40 MIR6724-1-201ENST00000616420 92 ntBASIC26.75■■□□□ 1.87
CCDC144BQ3MJ40 MIR6724-2-201ENST00000616483 92 ntBASIC26.75■■□□□ 1.87
CCDC144BQ3MJ40 MIR6724-4-201ENST00000617390 92 ntBASIC26.75■■□□□ 1.87
CCDC144BQ3MJ40 MIR6724-3-201ENST00000622482 92 ntBASIC26.75■■□□□ 1.87
CCDC144BQ3MJ40 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC26.75■■□□□ 1.87
CCDC144BQ3MJ40 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC26.75■■□□□ 1.87
CCDC144BQ3MJ40 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC26.75■■□□□ 1.87
CCDC144BQ3MJ40 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
CCDC144BQ3MJ40 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC26.74■■□□□ 1.87
CCDC144BQ3MJ40 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
CCDC144BQ3MJ40 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC26.74■■□□□ 1.87
CCDC144BQ3MJ40 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC26.74■■□□□ 1.87
CCDC144BQ3MJ40 AL136116.3-201ENST00000402907 1138 ntBASIC26.74■■□□□ 1.87
CCDC144BQ3MJ40 TK2-202ENST00000417693 1046 ntTSL 2 BASIC26.74■■□□□ 1.87
CCDC144BQ3MJ40 NALT1-201ENST00000429224 738 ntTSL 5 BASIC26.74■■□□□ 1.87
CCDC144BQ3MJ40 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC26.74■■□□□ 1.87
CCDC144BQ3MJ40 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC26.74■■□□□ 1.87
CCDC144BQ3MJ40 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC26.74■■□□□ 1.87
CCDC144BQ3MJ40 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
CCDC144BQ3MJ40 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC26.73■■□□□ 1.87
CCDC144BQ3MJ40 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC26.73■■□□□ 1.87
CCDC144BQ3MJ40 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC26.73■■□□□ 1.87
CCDC144BQ3MJ40 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC26.73■■□□□ 1.87
CCDC144BQ3MJ40 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC26.73■■□□□ 1.87
CCDC144BQ3MJ40 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC26.73■■□□□ 1.87
CCDC144BQ3MJ40 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
CCDC144BQ3MJ40 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
CCDC144BQ3MJ40 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC26.72■■□□□ 1.87
CCDC144BQ3MJ40 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC26.72■■□□□ 1.87
CCDC144BQ3MJ40 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC26.72■■□□□ 1.87
CCDC144BQ3MJ40 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC26.72■■□□□ 1.87
CCDC144BQ3MJ40 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
CCDC144BQ3MJ40 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC26.72■■□□□ 1.87
CCDC144BQ3MJ40 AC133561.1-201ENST00000568600 2415 ntBASIC26.72■■□□□ 1.87
CCDC144BQ3MJ40 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
CCDC144BQ3MJ40 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
CCDC144BQ3MJ40 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
CCDC144BQ3MJ40 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC26.71■■□□□ 1.87
CCDC144BQ3MJ40 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
CCDC144BQ3MJ40 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
CCDC144BQ3MJ40 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
CCDC144BQ3MJ40 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
CCDC144BQ3MJ40 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
CCDC144BQ3MJ40 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC26.71■■□□□ 1.87
CCDC144BQ3MJ40 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC26.71■■□□□ 1.87
CCDC144BQ3MJ40 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC26.71■■□□□ 1.87
CCDC144BQ3MJ40 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC26.71■■□□□ 1.87
CCDC144BQ3MJ40 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC26.71■■□□□ 1.87
CCDC144BQ3MJ40 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC26.71■■□□□ 1.87
CCDC144BQ3MJ40 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC26.7■■□□□ 1.87
CCDC144BQ3MJ40 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC26.7■■□□□ 1.87
CCDC144BQ3MJ40 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.86
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms