Protein–RNA interactions for Protein: Q38SD2

LRRK1, Leucine-rich repeat serine/threonine-protein kinase 1, humanhuman

Predictions only

Length 2,015 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRK1Q38SD2 TFPT-201ENST00000391757 774 ntTSL 5 BASIC23.08■■□□□ 1.28
LRRK1Q38SD2 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC23.08■■□□□ 1.28
LRRK1Q38SD2 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC23.08■■□□□ 1.28
LRRK1Q38SD2 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
LRRK1Q38SD2 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC23.07■■□□□ 1.28
LRRK1Q38SD2 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
LRRK1Q38SD2 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC23.07■■□□□ 1.28
LRRK1Q38SD2 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC23.07■■□□□ 1.28
LRRK1Q38SD2 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
LRRK1Q38SD2 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC23.06■■□□□ 1.28
LRRK1Q38SD2 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
LRRK1Q38SD2 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC23.06■■□□□ 1.28
LRRK1Q38SD2 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC23.06■■□□□ 1.28
LRRK1Q38SD2 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC23.05■■□□□ 1.28
LRRK1Q38SD2 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
LRRK1Q38SD2 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC23.05■■□□□ 1.28
LRRK1Q38SD2 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC23.05■■□□□ 1.28
LRRK1Q38SD2 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC23.05■■□□□ 1.28
LRRK1Q38SD2 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC23.04■■□□□ 1.28
LRRK1Q38SD2 TRIR-202ENST00000588213 841 ntTSL 3 BASIC23.04■■□□□ 1.28
LRRK1Q38SD2 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC23.04■■□□□ 1.28
LRRK1Q38SD2 MIR4466-201ENST00000606121 54 ntBASIC23.04■■□□□ 1.28
LRRK1Q38SD2 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC23.04■■□□□ 1.28
LRRK1Q38SD2 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
LRRK1Q38SD2 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
LRRK1Q38SD2 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC23.04■■□□□ 1.28
LRRK1Q38SD2 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC23.04■■□□□ 1.28
LRRK1Q38SD2 MED17-227ENST00000640521 2047 ntTSL 5 BASIC23.04■■□□□ 1.28
LRRK1Q38SD2 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
LRRK1Q38SD2 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC23.04■■□□□ 1.28
LRRK1Q38SD2 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
LRRK1Q38SD2 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
LRRK1Q38SD2 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC23.03■■□□□ 1.28
LRRK1Q38SD2 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC23.03■■□□□ 1.28
LRRK1Q38SD2 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
LRRK1Q38SD2 CD72-202ENST00000378430 585 ntTSL 3 BASIC23.03■■□□□ 1.28
LRRK1Q38SD2 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
LRRK1Q38SD2 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC23.03■■□□□ 1.28
LRRK1Q38SD2 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
LRRK1Q38SD2 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC23.03■■□□□ 1.28
LRRK1Q38SD2 CD37-213ENST00000598095 1598 ntTSL 2 BASIC23.03■■□□□ 1.28
LRRK1Q38SD2 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
LRRK1Q38SD2 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
LRRK1Q38SD2 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
LRRK1Q38SD2 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
LRRK1Q38SD2 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC23.02■■□□□ 1.28
LRRK1Q38SD2 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC23.02■■□□□ 1.28
LRRK1Q38SD2 LSM7-203ENST00000585409 512 ntTSL 2 BASIC23.01■■□□□ 1.27
LRRK1Q38SD2 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
LRRK1Q38SD2 AC138932.3-201ENST00000567634 1902 ntBASIC23.01■■□□□ 1.27
LRRK1Q38SD2 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC23.01■■□□□ 1.27
LRRK1Q38SD2 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC23.01■■□□□ 1.27
LRRK1Q38SD2 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
LRRK1Q38SD2 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
LRRK1Q38SD2 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
LRRK1Q38SD2 MIR3621-201ENST00000580529 85 ntBASIC23■■□□□ 1.27
LRRK1Q38SD2 RASSF1-AS1-201ENST00000629828 790 ntBASIC23■■□□□ 1.27
LRRK1Q38SD2 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC23■■□□□ 1.27
LRRK1Q38SD2 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC23■■□□□ 1.27
LRRK1Q38SD2 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
LRRK1Q38SD2 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC23■■□□□ 1.27
LRRK1Q38SD2 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC23■■□□□ 1.27
LRRK1Q38SD2 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC22.99■■□□□ 1.27
LRRK1Q38SD2 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC22.99■■□□□ 1.27
LRRK1Q38SD2 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
LRRK1Q38SD2 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC22.99■■□□□ 1.27
LRRK1Q38SD2 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC22.99■■□□□ 1.27
LRRK1Q38SD2 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
LRRK1Q38SD2 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC22.99■■□□□ 1.27
LRRK1Q38SD2 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC22.99■■□□□ 1.27
LRRK1Q38SD2 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
LRRK1Q38SD2 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
LRRK1Q38SD2 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC22.99■■□□□ 1.27
LRRK1Q38SD2 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
LRRK1Q38SD2 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC22.98■■□□□ 1.27
LRRK1Q38SD2 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC22.98■■□□□ 1.27
LRRK1Q38SD2 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC22.98■■□□□ 1.27
LRRK1Q38SD2 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC22.98■■□□□ 1.27
LRRK1Q38SD2 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC22.98■■□□□ 1.27
LRRK1Q38SD2 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
LRRK1Q38SD2 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
LRRK1Q38SD2 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC22.98■■□□□ 1.27
LRRK1Q38SD2 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC22.98■■□□□ 1.27
LRRK1Q38SD2 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
LRRK1Q38SD2 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
LRRK1Q38SD2 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC22.97■■□□□ 1.27
LRRK1Q38SD2 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC22.97■■□□□ 1.27
LRRK1Q38SD2 AC004448.1-201ENST00000458332 883 ntBASIC22.96■■□□□ 1.27
LRRK1Q38SD2 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC22.96■■□□□ 1.27
LRRK1Q38SD2 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC22.96■■□□□ 1.27
LRRK1Q38SD2 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
LRRK1Q38SD2 AP003733.4-201ENST00000623785 1697 ntBASIC22.96■■□□□ 1.27
LRRK1Q38SD2 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
LRRK1Q38SD2 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC22.96■■□□□ 1.27
LRRK1Q38SD2 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC22.95■■□□□ 1.26
LRRK1Q38SD2 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC22.95■■□□□ 1.26
LRRK1Q38SD2 AK3-203ENST00000447596 705 ntTSL 2 BASIC22.95■■□□□ 1.26
LRRK1Q38SD2 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC22.95■■□□□ 1.26
LRRK1Q38SD2 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
LRRK1Q38SD2 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC22.95■■□□□ 1.26
Retrieved 100 of 98,524 protein–RNA pairs in 70.1 ms