Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
PRKDCP78527 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC17.12■□□□□ 0.33
PRKDCP78527 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC17.12■□□□□ 0.33
PRKDCP78527 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PRKDCP78527 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PRKDCP78527 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
PRKDCP78527 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC17.11■□□□□ 0.33
PRKDCP78527 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PRKDCP78527 AC006015.1-201ENST00000429970 570 ntBASIC17.11■□□□□ 0.33
PRKDCP78527 MIR6722-201ENST00000617286 78 ntBASIC17.11■□□□□ 0.33
PRKDCP78527 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
PRKDCP78527 AC006455.2-201ENST00000429931 906 ntBASIC17.1■□□□□ 0.33
PRKDCP78527 TMEM191A-211ENST00000637163 1067 ntBASIC17.1■□□□□ 0.33
PRKDCP78527 CROCCP5-201ENST00000436658 830 ntBASIC17.1■□□□□ 0.33
PRKDCP78527 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
PRKDCP78527 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC17.1■□□□□ 0.33
PRKDCP78527 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
PRKDCP78527 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC17.1■□□□□ 0.33
PRKDCP78527 AL499627.2-201ENST00000606283 725 ntBASIC17.1■□□□□ 0.33
PRKDCP78527 AL358852.1-201ENST00000623174 1268 ntBASIC17.1■□□□□ 0.33
PRKDCP78527 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
PRKDCP78527 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
PRKDCP78527 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC17.09■□□□□ 0.33
PRKDCP78527 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC17.09■□□□□ 0.33
PRKDCP78527 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC17.09■□□□□ 0.33
PRKDCP78527 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
PRKDCP78527 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PRKDCP78527 AC093827.2-201ENST00000512654 315 ntBASIC17.09■□□□□ 0.33
PRKDCP78527 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
PRKDCP78527 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC17.09■□□□□ 0.33
PRKDCP78527 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
PRKDCP78527 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
PRKDCP78527 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC17.09■□□□□ 0.33
PRKDCP78527 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
PRKDCP78527 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
PRKDCP78527 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
PRKDCP78527 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
PRKDCP78527 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
PRKDCP78527 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
PRKDCP78527 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC17.08■□□□□ 0.33
PRKDCP78527 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.32
PRKDCP78527 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC17.08■□□□□ 0.32
PRKDCP78527 GRAMD4P2-201ENST00000423297 1097 ntBASIC17.08■□□□□ 0.32
PRKDCP78527 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
PRKDCP78527 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
PRKDCP78527 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
PRKDCP78527 AC008687.6-201ENST00000596318 630 ntBASIC17.08■□□□□ 0.32
PRKDCP78527 MPST-208ENST00000628507 698 ntTSL 5 BASIC17.08■□□□□ 0.32
PRKDCP78527 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
PRKDCP78527 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PRKDCP78527 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PRKDCP78527 C17orf82-201ENST00000623772 1530 ntBASIC17.07■□□□□ 0.32
PRKDCP78527 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC17.07■□□□□ 0.32
PRKDCP78527 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
PRKDCP78527 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PRKDCP78527 AL355802.2-201ENST00000402069 882 ntBASIC17.07■□□□□ 0.32
PRKDCP78527 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC17.07■□□□□ 0.32
PRKDCP78527 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PRKDCP78527 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PRKDCP78527 KRT18P14-201ENST00000534205 1250 ntBASIC17.06■□□□□ 0.32
PRKDCP78527 CCDC92B-201ENST00000575506 885 ntBASIC17.06■□□□□ 0.32
PRKDCP78527 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC17.06■□□□□ 0.32
PRKDCP78527 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PRKDCP78527 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
PRKDCP78527 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PRKDCP78527 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC17.06■□□□□ 0.32
PRKDCP78527 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC17.06■□□□□ 0.32
PRKDCP78527 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PRKDCP78527 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
PRKDCP78527 AC099791.2-201ENST00000605725 427 ntBASIC17.05■□□□□ 0.32
PRKDCP78527 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
PRKDCP78527 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
PRKDCP78527 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PRKDCP78527 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
PRKDCP78527 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
PRKDCP78527 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
PRKDCP78527 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC17.05■□□□□ 0.32
PRKDCP78527 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC17.05■□□□□ 0.32
PRKDCP78527 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
PRKDCP78527 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
PRKDCP78527 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC17.04■□□□□ 0.32
PRKDCP78527 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC17.04■□□□□ 0.32
PRKDCP78527 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
PRKDCP78527 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
PRKDCP78527 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC17.04■□□□□ 0.32
PRKDCP78527 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
PRKDCP78527 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
PRKDCP78527 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC17.03■□□□□ 0.32
PRKDCP78527 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC17.03■□□□□ 0.32
PRKDCP78527 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC17.03■□□□□ 0.32
PRKDCP78527 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC17.03■□□□□ 0.32
PRKDCP78527 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC17.03■□□□□ 0.32
PRKDCP78527 AC073111.5-205ENST00000641717 521 ntBASIC17.03■□□□□ 0.32
PRKDCP78527 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
PRKDCP78527 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
PRKDCP78527 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
PRKDCP78527 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
PRKDCP78527 MIR4651-201ENST00000582622 73 ntBASIC17.02■□□□□ 0.32
PRKDCP78527 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC17.02■□□□□ 0.32
PRKDCP78527 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 13.5 ms