Protein–RNA interactions for Protein: P50479

PDLIM4, PDZ and LIM domain protein 4, humanhuman

Predictions only

Length 330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4P50479 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC19.58■□□□□ 0.73
PDLIM4P50479 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
PDLIM4P50479 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
PDLIM4P50479 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC19.58■□□□□ 0.72
PDLIM4P50479 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
PDLIM4P50479 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC19.58■□□□□ 0.72
PDLIM4P50479 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
PDLIM4P50479 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
PDLIM4P50479 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
PDLIM4P50479 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
PDLIM4P50479 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC19.57■□□□□ 0.72
PDLIM4P50479 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC19.57■□□□□ 0.72
PDLIM4P50479 MIR4466-201ENST00000606121 54 ntBASIC19.57■□□□□ 0.72
PDLIM4P50479 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
PDLIM4P50479 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
PDLIM4P50479 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC19.57■□□□□ 0.72
PDLIM4P50479 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC19.57■□□□□ 0.72
PDLIM4P50479 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
PDLIM4P50479 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
PDLIM4P50479 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
PDLIM4P50479 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
PDLIM4P50479 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
PDLIM4P50479 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
PDLIM4P50479 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC19.55■□□□□ 0.72
PDLIM4P50479 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
PDLIM4P50479 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
PDLIM4P50479 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
PDLIM4P50479 RARA-203ENST00000394086 2008 ntTSL 2 BASIC19.55■□□□□ 0.72
PDLIM4P50479 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
PDLIM4P50479 MIR935-201ENST00000401179 91 ntBASIC19.55■□□□□ 0.72
PDLIM4P50479 AC096631.2-201ENST00000436136 790 ntBASIC19.55■□□□□ 0.72
PDLIM4P50479 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
PDLIM4P50479 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
PDLIM4P50479 AL512631.2-201ENST00000604634 923 ntBASIC19.55■□□□□ 0.72
PDLIM4P50479 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
PDLIM4P50479 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
PDLIM4P50479 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC19.54■□□□□ 0.72
PDLIM4P50479 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
PDLIM4P50479 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC19.54■□□□□ 0.72
PDLIM4P50479 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
PDLIM4P50479 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
PDLIM4P50479 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
PDLIM4P50479 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
PDLIM4P50479 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
PDLIM4P50479 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
PDLIM4P50479 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC19.53■□□□□ 0.72
PDLIM4P50479 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
PDLIM4P50479 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
PDLIM4P50479 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
PDLIM4P50479 QDPR-206ENST00000508623 601 ntTSL 3 BASIC19.53■□□□□ 0.72
PDLIM4P50479 AC110285.6-201ENST00000617652 491 ntBASIC19.53■□□□□ 0.72
PDLIM4P50479 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
PDLIM4P50479 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
PDLIM4P50479 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC19.53■□□□□ 0.72
PDLIM4P50479 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC19.52■□□□□ 0.72
PDLIM4P50479 CLTA-206ENST00000466396 695 ntTSL 2 BASIC19.52■□□□□ 0.72
PDLIM4P50479 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
PDLIM4P50479 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC19.52■□□□□ 0.72
PDLIM4P50479 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
PDLIM4P50479 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC19.51■□□□□ 0.71
PDLIM4P50479 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
PDLIM4P50479 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
PDLIM4P50479 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC19.51■□□□□ 0.71
PDLIM4P50479 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
PDLIM4P50479 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
PDLIM4P50479 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC19.51■□□□□ 0.71
PDLIM4P50479 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
PDLIM4P50479 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC19.5■□□□□ 0.71
PDLIM4P50479 AC020928.2-201ENST00000588717 2197 ntBASIC19.5■□□□□ 0.71
PDLIM4P50479 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
PDLIM4P50479 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC19.5■□□□□ 0.71
PDLIM4P50479 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC19.5■□□□□ 0.71
PDLIM4P50479 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC19.5■□□□□ 0.71
PDLIM4P50479 AC092803.2-201ENST00000564287 1899 ntBASIC19.5■□□□□ 0.71
PDLIM4P50479 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC19.49■□□□□ 0.71
PDLIM4P50479 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC19.49■□□□□ 0.71
PDLIM4P50479 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC19.49■□□□□ 0.71
PDLIM4P50479 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC19.49■□□□□ 0.71
PDLIM4P50479 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
PDLIM4P50479 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC19.49■□□□□ 0.71
PDLIM4P50479 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
PDLIM4P50479 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC19.49■□□□□ 0.71
PDLIM4P50479 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC19.48■□□□□ 0.71
PDLIM4P50479 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
PDLIM4P50479 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
PDLIM4P50479 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
PDLIM4P50479 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC19.48■□□□□ 0.71
PDLIM4P50479 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
PDLIM4P50479 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
PDLIM4P50479 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
PDLIM4P50479 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC19.48■□□□□ 0.71
PDLIM4P50479 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
PDLIM4P50479 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC19.48■□□□□ 0.71
PDLIM4P50479 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
PDLIM4P50479 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
PDLIM4P50479 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
PDLIM4P50479 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
PDLIM4P50479 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
PDLIM4P50479 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
PDLIM4P50479 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC19.48■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms