Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
RFX3P48380 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
RFX3P48380 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
RFX3P48380 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
RFX3P48380 HLA-L-211ENST00000482052 1765 ntBASIC21.57■■□□□ 1.04
RFX3P48380 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
RFX3P48380 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC21.57■■□□□ 1.04
RFX3P48380 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
RFX3P48380 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC21.57■■□□□ 1.04
RFX3P48380 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
RFX3P48380 THRA-202ENST00000394121 2260 ntTSL 2 BASIC21.57■■□□□ 1.04
RFX3P48380 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
RFX3P48380 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC21.56■■□□□ 1.04
RFX3P48380 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
RFX3P48380 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
RFX3P48380 YBX1P4-201ENST00000392794 808 ntBASIC21.56■■□□□ 1.04
RFX3P48380 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
RFX3P48380 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
RFX3P48380 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC21.55■■□□□ 1.04
RFX3P48380 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
RFX3P48380 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
RFX3P48380 PREB-202ENST00000406567 1910 ntTSL 5 BASIC21.55■■□□□ 1.04
RFX3P48380 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
RFX3P48380 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC21.55■■□□□ 1.04
RFX3P48380 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
RFX3P48380 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
RFX3P48380 AC022616.5-201ENST00000518796 181 ntBASIC21.55■■□□□ 1.04
RFX3P48380 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC21.55■■□□□ 1.04
RFX3P48380 SSSCA1-AS1-201ENST00000567594 614 ntBASIC21.55■■□□□ 1.04
RFX3P48380 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC21.55■■□□□ 1.04
RFX3P48380 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
RFX3P48380 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
RFX3P48380 EED-207ENST00000528180 1745 ntTSL 5 BASIC21.55■■□□□ 1.04
RFX3P48380 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC21.54■■□□□ 1.04
RFX3P48380 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC21.54■■□□□ 1.04
RFX3P48380 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC21.54■■□□□ 1.04
RFX3P48380 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
RFX3P48380 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
RFX3P48380 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC21.54■■□□□ 1.04
RFX3P48380 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
RFX3P48380 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
RFX3P48380 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
RFX3P48380 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
RFX3P48380 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC21.53■■□□□ 1.04
RFX3P48380 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC21.53■■□□□ 1.04
RFX3P48380 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
RFX3P48380 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC21.53■■□□□ 1.04
RFX3P48380 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC21.53■■□□□ 1.04
RFX3P48380 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC21.53■■□□□ 1.04
RFX3P48380 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
RFX3P48380 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC21.52■■□□□ 1.04
RFX3P48380 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
RFX3P48380 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
RFX3P48380 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
RFX3P48380 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC21.52■■□□□ 1.04
RFX3P48380 THA1P-201ENST00000590384 1145 ntBASIC21.52■■□□□ 1.04
RFX3P48380 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC21.52■■□□□ 1.04
RFX3P48380 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC21.52■■□□□ 1.04
RFX3P48380 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
RFX3P48380 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
RFX3P48380 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.03
RFX3P48380 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC21.52■■□□□ 1.03
RFX3P48380 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.03
RFX3P48380 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC21.51■■□□□ 1.03
RFX3P48380 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
RFX3P48380 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
RFX3P48380 AC120024.1-201ENST00000562672 995 ntBASIC21.51■■□□□ 1.03
RFX3P48380 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
RFX3P48380 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
RFX3P48380 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
RFX3P48380 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC21.5■■□□□ 1.03
RFX3P48380 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
RFX3P48380 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC21.5■■□□□ 1.03
RFX3P48380 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC21.5■■□□□ 1.03
RFX3P48380 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
RFX3P48380 AC103834.1-201ENST00000520383 144 ntBASIC21.5■■□□□ 1.03
RFX3P48380 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC21.5■■□□□ 1.03
RFX3P48380 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
RFX3P48380 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
RFX3P48380 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
RFX3P48380 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
RFX3P48380 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
RFX3P48380 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC21.49■■□□□ 1.03
RFX3P48380 MIR4508-201ENST00000584178 70 ntBASIC21.49■■□□□ 1.03
RFX3P48380 GAK-223ENST00000628912 497 ntTSL 5 BASIC21.49■■□□□ 1.03
RFX3P48380 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
RFX3P48380 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
RFX3P48380 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
RFX3P48380 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
RFX3P48380 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
RFX3P48380 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
RFX3P48380 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC21.48■■□□□ 1.03
RFX3P48380 AC011551.1-201ENST00000614101 683 ntBASIC21.48■■□□□ 1.03
RFX3P48380 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
RFX3P48380 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
RFX3P48380 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC21.48■■□□□ 1.03
RFX3P48380 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
RFX3P48380 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
RFX3P48380 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC21.48■■□□□ 1.03
RFX3P48380 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 46.1 ms