Protein–RNA interactions for Protein: P03905

MT-ND4, NADH-ubiquinone oxidoreductase chain 4, humanhuman

Predictions only

Length 459 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MT-ND4P03905 MIR3960-201ENST00000583311 91 ntBASIC20■□□□□ 0.79
MT-ND4P03905 AC092296.2-201ENST00000589470 999 ntBASIC20■□□□□ 0.79
MT-ND4P03905 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
MT-ND4P03905 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC20■□□□□ 0.79
MT-ND4P03905 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC20■□□□□ 0.79
MT-ND4P03905 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC20■□□□□ 0.79
MT-ND4P03905 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
MT-ND4P03905 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC20■□□□□ 0.79
MT-ND4P03905 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
MT-ND4P03905 AC233723.2-201ENST00000623798 2106 ntBASIC19.99■□□□□ 0.79
MT-ND4P03905 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
MT-ND4P03905 SRP68-213ENST00000629930 165 ntTSL 5 BASIC19.99■□□□□ 0.79
MT-ND4P03905 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
MT-ND4P03905 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC19.99■□□□□ 0.79
MT-ND4P03905 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
MT-ND4P03905 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
MT-ND4P03905 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
MT-ND4P03905 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC19.98■□□□□ 0.79
MT-ND4P03905 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC19.98■□□□□ 0.79
MT-ND4P03905 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
MT-ND4P03905 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
MT-ND4P03905 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
MT-ND4P03905 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
MT-ND4P03905 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
MT-ND4P03905 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC19.97■□□□□ 0.79
MT-ND4P03905 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
MT-ND4P03905 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC19.97■□□□□ 0.79
MT-ND4P03905 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC19.97■□□□□ 0.79
MT-ND4P03905 AC022413.1-201ENST00000624602 984 ntBASIC19.97■□□□□ 0.79
MT-ND4P03905 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC19.97■□□□□ 0.79
MT-ND4P03905 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
MT-ND4P03905 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
MT-ND4P03905 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
MT-ND4P03905 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC19.97■□□□□ 0.79
MT-ND4P03905 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
MT-ND4P03905 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
MT-ND4P03905 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
MT-ND4P03905 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
MT-ND4P03905 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC19.96■□□□□ 0.79
MT-ND4P03905 ECEL1P2-201ENST00000461596 1295 ntBASIC19.96■□□□□ 0.79
MT-ND4P03905 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC19.96■□□□□ 0.79
MT-ND4P03905 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
MT-ND4P03905 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC19.96■□□□□ 0.79
MT-ND4P03905 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
MT-ND4P03905 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
MT-ND4P03905 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC19.96■□□□□ 0.79
MT-ND4P03905 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
MT-ND4P03905 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
MT-ND4P03905 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
MT-ND4P03905 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC19.95■□□□□ 0.78
MT-ND4P03905 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC19.95■□□□□ 0.78
MT-ND4P03905 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
MT-ND4P03905 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
MT-ND4P03905 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
MT-ND4P03905 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
MT-ND4P03905 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC19.94■□□□□ 0.78
MT-ND4P03905 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
MT-ND4P03905 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC19.94■□□□□ 0.78
MT-ND4P03905 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
MT-ND4P03905 REST-210ENST00000638187 1334 ntTSL 5 BASIC19.94■□□□□ 0.78
MT-ND4P03905 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC19.94■□□□□ 0.78
MT-ND4P03905 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
MT-ND4P03905 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
MT-ND4P03905 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
MT-ND4P03905 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
MT-ND4P03905 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
MT-ND4P03905 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC19.93■□□□□ 0.78
MT-ND4P03905 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
MT-ND4P03905 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
MT-ND4P03905 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
MT-ND4P03905 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
MT-ND4P03905 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
MT-ND4P03905 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
MT-ND4P03905 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC19.92■□□□□ 0.78
MT-ND4P03905 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
MT-ND4P03905 CEP120-209ENST00000515110 606 ntTSL 3 BASIC19.92■□□□□ 0.78
MT-ND4P03905 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
MT-ND4P03905 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
MT-ND4P03905 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
MT-ND4P03905 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
MT-ND4P03905 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
MT-ND4P03905 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
MT-ND4P03905 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
MT-ND4P03905 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
MT-ND4P03905 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
MT-ND4P03905 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
MT-ND4P03905 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
MT-ND4P03905 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
MT-ND4P03905 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC19.91■□□□□ 0.78
MT-ND4P03905 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC19.91■□□□□ 0.78
MT-ND4P03905 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC19.91■□□□□ 0.78
MT-ND4P03905 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
MT-ND4P03905 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
MT-ND4P03905 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
MT-ND4P03905 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
MT-ND4P03905 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
MT-ND4P03905 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC19.9■□□□□ 0.78
MT-ND4P03905 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
MT-ND4P03905 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
MT-ND4P03905 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 11.7 ms