Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
COL2A1P02458 SRD5A1P1-201ENST00000442297 786 ntBASIC27.38■■□□□ 1.97
COL2A1P02458 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC27.38■■□□□ 1.97
COL2A1P02458 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC27.38■■□□□ 1.97
COL2A1P02458 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC27.38■■□□□ 1.97
COL2A1P02458 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC27.38■■□□□ 1.97
COL2A1P02458 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC27.38■■□□□ 1.97
COL2A1P02458 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC27.38■■□□□ 1.97
COL2A1P02458 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC27.38■■□□□ 1.97
COL2A1P02458 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC27.38■■□□□ 1.97
COL2A1P02458 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC27.38■■□□□ 1.97
COL2A1P02458 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
COL2A1P02458 AC091060.1-201ENST00000623524 1766 ntBASIC27.37■■□□□ 1.97
COL2A1P02458 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC27.37■■□□□ 1.97
COL2A1P02458 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC27.37■■□□□ 1.97
COL2A1P02458 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
COL2A1P02458 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC27.37■■□□□ 1.97
COL2A1P02458 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC27.36■■□□□ 1.97
COL2A1P02458 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC27.36■■□□□ 1.97
COL2A1P02458 AL031432.3-201ENST00000607698 485 ntBASIC27.36■■□□□ 1.97
COL2A1P02458 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC27.36■■□□□ 1.97
COL2A1P02458 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
COL2A1P02458 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
COL2A1P02458 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
COL2A1P02458 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
COL2A1P02458 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
COL2A1P02458 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC27.35■■□□□ 1.97
COL2A1P02458 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC27.34■■□□□ 1.97
COL2A1P02458 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC27.34■■□□□ 1.97
COL2A1P02458 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
COL2A1P02458 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
COL2A1P02458 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC27.34■■□□□ 1.97
COL2A1P02458 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
COL2A1P02458 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
COL2A1P02458 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
COL2A1P02458 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC27.33■■□□□ 1.97
COL2A1P02458 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC27.33■■□□□ 1.97
COL2A1P02458 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC27.33■■□□□ 1.97
COL2A1P02458 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC27.33■■□□□ 1.97
COL2A1P02458 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC27.33■■□□□ 1.97
COL2A1P02458 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC27.32■■□□□ 1.96
COL2A1P02458 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC27.32■■□□□ 1.96
COL2A1P02458 REST-206ENST00000612429 1376 ntTSL 5 BASIC27.32■■□□□ 1.96
COL2A1P02458 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC27.32■■□□□ 1.96
COL2A1P02458 REST-207ENST00000616975 1370 ntTSL 5 BASIC27.32■■□□□ 1.96
COL2A1P02458 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC27.32■■□□□ 1.96
COL2A1P02458 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC27.32■■□□□ 1.96
COL2A1P02458 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC27.32■■□□□ 1.96
COL2A1P02458 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
COL2A1P02458 LSR-205ENST00000427250 1606 ntTSL 2 BASIC27.32■■□□□ 1.96
COL2A1P02458 CEBPA-AS1-201ENST00000592982 2198 ntBASIC27.32■■□□□ 1.96
COL2A1P02458 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC27.32■■□□□ 1.96
COL2A1P02458 UNC93B3-201ENST00000308076 687 ntBASIC27.32■■□□□ 1.96
COL2A1P02458 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
COL2A1P02458 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC27.31■■□□□ 1.96
COL2A1P02458 AC135279.3-201ENST00000610945 1311 ntBASIC27.31■■□□□ 1.96
COL2A1P02458 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
COL2A1P02458 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC27.31■■□□□ 1.96
COL2A1P02458 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC27.31■■□□□ 1.96
COL2A1P02458 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC27.31■■□□□ 1.96
COL2A1P02458 AL136162.1-201ENST00000607711 1078 ntBASIC27.31■■□□□ 1.96
COL2A1P02458 SF1-220ENST00000626028 704 ntTSL 2 BASIC27.31■■□□□ 1.96
COL2A1P02458 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
COL2A1P02458 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC27.3■■□□□ 1.96
COL2A1P02458 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC27.3■■□□□ 1.96
COL2A1P02458 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC27.3■■□□□ 1.96
COL2A1P02458 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC27.3■■□□□ 1.96
COL2A1P02458 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC27.3■■□□□ 1.96
COL2A1P02458 SUDS3P1-201ENST00000505831 966 ntBASIC27.3■■□□□ 1.96
COL2A1P02458 CD37-213ENST00000598095 1598 ntTSL 2 BASIC27.3■■□□□ 1.96
COL2A1P02458 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC27.3■■□□□ 1.96
COL2A1P02458 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC27.29■■□□□ 1.96
COL2A1P02458 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
COL2A1P02458 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
COL2A1P02458 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
COL2A1P02458 PBX2P1-201ENST00000493219 1291 ntBASIC27.29■■□□□ 1.96
COL2A1P02458 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC27.29■■□□□ 1.96
COL2A1P02458 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC27.29■■□□□ 1.96
COL2A1P02458 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC27.29■■□□□ 1.96
COL2A1P02458 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC27.29■■□□□ 1.96
COL2A1P02458 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC27.29■■□□□ 1.96
COL2A1P02458 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC27.28■■□□□ 1.96
COL2A1P02458 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
COL2A1P02458 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
COL2A1P02458 AL022069.1-201ENST00000568025 1636 ntBASIC27.28■■□□□ 1.96
COL2A1P02458 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC27.28■■□□□ 1.96
COL2A1P02458 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC27.28■■□□□ 1.96
COL2A1P02458 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
COL2A1P02458 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC27.27■■□□□ 1.96
COL2A1P02458 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC27.27■■□□□ 1.96
COL2A1P02458 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC27.27■■□□□ 1.96
COL2A1P02458 EDA-201ENST00000338901 1233 ntBASIC27.26■■□□□ 1.95
COL2A1P02458 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC27.26■■□□□ 1.95
COL2A1P02458 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
COL2A1P02458 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC27.26■■□□□ 1.95
COL2A1P02458 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
COL2A1P02458 EBPL-204ENST00000378272 766 ntTSL 3 BASIC27.25■■□□□ 1.95
COL2A1P02458 AC024257.2-201ENST00000549699 147 ntBASIC27.25■■□□□ 1.95
COL2A1P02458 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC27.25■■□□□ 1.95
COL2A1P02458 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC27.25■■□□□ 1.95
Retrieved 100 of 98,524 protein–RNA pairs in 15.5 ms