Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC28.75■■■□□ 2.19
SHROOM4Q9ULL8 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC28.75■■■□□ 2.19
SHROOM4Q9ULL8 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC28.75■■■□□ 2.19
SHROOM4Q9ULL8 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC28.75■■■□□ 2.19
SHROOM4Q9ULL8 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC28.75■■■□□ 2.19
SHROOM4Q9ULL8 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC28.75■■■□□ 2.19
SHROOM4Q9ULL8 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC28.75■■■□□ 2.19
SHROOM4Q9ULL8 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC28.75■■■□□ 2.19
SHROOM4Q9ULL8 S100A2-203ENST00000368709 457 ntAPPRIS P1 TSL 3 BASIC28.75■■■□□ 2.19
SHROOM4Q9ULL8 UBL4A-201ENST00000369653 711 ntTSL 3 BASIC28.75■■■□□ 2.19
SHROOM4Q9ULL8 SIAH2-AS1-201ENST00000461943 441 ntTSL 4 BASIC28.75■■■□□ 2.19
SHROOM4Q9ULL8 AC132192.2-201ENST00000596206 1147 ntBASIC28.75■■■□□ 2.19
SHROOM4Q9ULL8 LINC01517-203ENST00000616194 908 ntTSL 5 BASIC28.75■■■□□ 2.19
SHROOM4Q9ULL8 LINC01672-205ENST00000635092 633 ntTSL 5 BASIC28.75■■■□□ 2.19
SHROOM4Q9ULL8 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC28.75■■■□□ 2.19
SHROOM4Q9ULL8 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC28.75■■■□□ 2.19
SHROOM4Q9ULL8 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC28.75■■■□□ 2.19
SHROOM4Q9ULL8 AC008894.3-201ENST00000624324 3103 ntBASIC28.75■■■□□ 2.19
SHROOM4Q9ULL8 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC28.75■■■□□ 2.19
SHROOM4Q9ULL8 AC090616.6-203ENST00000579186 1945 ntBASIC28.75■■■□□ 2.19
SHROOM4Q9ULL8 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
SHROOM4Q9ULL8 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC28.74■■■□□ 2.19
SHROOM4Q9ULL8 STK33-217ENST00000534493 1895 ntTSL 2 BASIC28.74■■■□□ 2.19
SHROOM4Q9ULL8 ZNF333-209ENST00000601134 1392 ntTSL 5 BASIC28.74■■■□□ 2.19
SHROOM4Q9ULL8 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC28.74■■■□□ 2.19
SHROOM4Q9ULL8 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
SHROOM4Q9ULL8 AK1-202ENST00000373156 757 ntAPPRIS P1 TSL 3 BASIC28.74■■■□□ 2.19
SHROOM4Q9ULL8 IDI2-AS1-201ENST00000420381 672 ntTSL 1 (best) BASIC28.74■■■□□ 2.19
SHROOM4Q9ULL8 CHID1-202ENST00000429789 1289 ntTSL 1 (best) BASIC28.74■■■□□ 2.19
SHROOM4Q9ULL8 AC012618.1-201ENST00000461223 412 ntBASIC28.74■■■□□ 2.19
SHROOM4Q9ULL8 IKBKB-212ENST00000519735 1166 ntTSL 1 (best) BASIC28.74■■■□□ 2.19
SHROOM4Q9ULL8 AC022858.1-201ENST00000521685 685 ntTSL 3 BASIC28.74■■■□□ 2.19
SHROOM4Q9ULL8 ENDOV-229ENST00000523999 864 ntTSL 1 (best) BASIC28.74■■■□□ 2.19
SHROOM4Q9ULL8 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC28.74■■■□□ 2.19
SHROOM4Q9ULL8 AC137723.1-201ENST00000584705 709 ntTSL 3 BASIC28.74■■■□□ 2.19
SHROOM4Q9ULL8 WDR7-208ENST00000589935 544 ntTSL 4 BASIC28.74■■■□□ 2.19
SHROOM4Q9ULL8 AL603764.1-201ENST00000636452 321 ntBASIC28.74■■■□□ 2.19
SHROOM4Q9ULL8 AC068587.8-201ENST00000641239 219 ntBASIC28.74■■■□□ 2.19
SHROOM4Q9ULL8 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC28.74■■■□□ 2.19
SHROOM4Q9ULL8 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
SHROOM4Q9ULL8 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
SHROOM4Q9ULL8 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
SHROOM4Q9ULL8 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC28.74■■■□□ 2.19
SHROOM4Q9ULL8 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
SHROOM4Q9ULL8 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
SHROOM4Q9ULL8 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC28.74■■■□□ 2.19
SHROOM4Q9ULL8 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC28.74■■■□□ 2.19
SHROOM4Q9ULL8 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC28.74■■■□□ 2.19
SHROOM4Q9ULL8 AC008741.2-201ENST00000612792 3115 ntBASIC28.74■■■□□ 2.19
SHROOM4Q9ULL8 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
SHROOM4Q9ULL8 KAAG1-201ENST00000274766 1382 ntAPPRIS P1 BASIC28.74■■■□□ 2.19
SHROOM4Q9ULL8 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
SHROOM4Q9ULL8 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC28.74■■■□□ 2.19
SHROOM4Q9ULL8 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC28.73■■■□□ 2.19
SHROOM4Q9ULL8 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC28.73■■■□□ 2.19
SHROOM4Q9ULL8 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC28.73■■■□□ 2.19
SHROOM4Q9ULL8 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC28.73■■■□□ 2.19
SHROOM4Q9ULL8 TSPO2-201ENST00000373158 718 ntTSL 1 (best) BASIC28.73■■■□□ 2.19
SHROOM4Q9ULL8 TMEM219-202ENST00000414689 1024 ntAPPRIS P1 TSL 1 (best) BASIC28.73■■■□□ 2.19
SHROOM4Q9ULL8 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC28.73■■■□□ 2.19
SHROOM4Q9ULL8 TMEM219-204ENST00000566848 1292 ntAPPRIS P1 TSL 1 (best) BASIC28.73■■■□□ 2.19
SHROOM4Q9ULL8 AC061992.1-201ENST00000592569 777 ntTSL 3 BASIC28.73■■■□□ 2.19
SHROOM4Q9ULL8 AC051619.9-201ENST00000623237 597 ntBASIC28.73■■■□□ 2.19
SHROOM4Q9ULL8 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC28.73■■■□□ 2.19
SHROOM4Q9ULL8 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC28.73■■■□□ 2.19
SHROOM4Q9ULL8 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC28.73■■■□□ 2.19
SHROOM4Q9ULL8 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC28.73■■■□□ 2.19
SHROOM4Q9ULL8 CXorf40B-202ENST00000370404 1316 ntAPPRIS P2 TSL 2 BASIC28.73■■■□□ 2.19
SHROOM4Q9ULL8 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC28.73■■■□□ 2.19
SHROOM4Q9ULL8 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC28.73■■■□□ 2.19
SHROOM4Q9ULL8 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC28.73■■■□□ 2.19
SHROOM4Q9ULL8 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC28.73■■■□□ 2.19
SHROOM4Q9ULL8 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC28.73■■■□□ 2.19
SHROOM4Q9ULL8 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC28.73■■■□□ 2.19
SHROOM4Q9ULL8 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC28.73■■■□□ 2.19
SHROOM4Q9ULL8 TUBA3D-201ENST00000321253 1546 ntAPPRIS P1 TSL 1 (best) BASIC28.73■■■□□ 2.19
SHROOM4Q9ULL8 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC28.73■■■□□ 2.19
SHROOM4Q9ULL8 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC28.73■■■□□ 2.19
SHROOM4Q9ULL8 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC28.73■■■□□ 2.19
SHROOM4Q9ULL8 PIGC-201ENST00000344529 1447 ntAPPRIS P1 TSL 1 (best) BASIC28.72■■■□□ 2.19
SHROOM4Q9ULL8 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC28.72■■■□□ 2.19
SHROOM4Q9ULL8 ZNF124-204ENST00000491356 956 ntTSL 2 BASIC28.72■■■□□ 2.19
SHROOM4Q9ULL8 AC104561.3-201ENST00000518590 715 ntTSL 5 BASIC28.72■■■□□ 2.19
SHROOM4Q9ULL8 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC28.72■■■□□ 2.19
SHROOM4Q9ULL8 SEC13-208ENST00000397109 1467 ntTSL 1 (best) BASIC28.72■■■□□ 2.19
SHROOM4Q9ULL8 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC28.72■■■□□ 2.19
SHROOM4Q9ULL8 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC28.72■■■□□ 2.19
SHROOM4Q9ULL8 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC28.72■■■□□ 2.19
SHROOM4Q9ULL8 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC28.72■■■□□ 2.19
SHROOM4Q9ULL8 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC28.72■■■□□ 2.19
SHROOM4Q9ULL8 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC28.72■■■□□ 2.19
SHROOM4Q9ULL8 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC28.72■■■□□ 2.19
SHROOM4Q9ULL8 C1orf53-201ENST00000367393 588 ntAPPRIS P1 TSL 1 (best) BASIC28.72■■■□□ 2.19
SHROOM4Q9ULL8 TMEM14B-202ENST00000379542 975 ntAPPRIS P1 TSL 1 (best) BASIC28.72■■■□□ 2.19
SHROOM4Q9ULL8 IGHV3-49-201ENST00000390625 439 ntAPPRIS P1 BASIC28.72■■■□□ 2.19
SHROOM4Q9ULL8 TAPBP-241ENST00000489157 1299 ntTSL 1 (best) BASIC28.72■■■□□ 2.19
SHROOM4Q9ULL8 AC246817.2-203ENST00000517357 569 ntTSL 4 BASIC28.72■■■□□ 2.19
SHROOM4Q9ULL8 AC246817.2-202ENST00000519393 564 ntTSL 4 BASIC28.72■■■□□ 2.19
SHROOM4Q9ULL8 INO80C-210ENST00000590757 595 ntTSL 2 BASIC28.72■■■□□ 2.19
SHROOM4Q9ULL8 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC28.72■■■□□ 2.19
Retrieved 100 of 98,524 protein–RNA pairs in 62.9 ms