Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
PCDH9Q9HC56 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC15.86■□□□□ 0.13
PCDH9Q9HC56 RASL12-203ENST00000434605 982 ntTSL 2 BASIC15.86■□□□□ 0.13
PCDH9Q9HC56 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
PCDH9Q9HC56 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
PCDH9Q9HC56 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC15.86■□□□□ 0.13
PCDH9Q9HC56 AC092337.1-201ENST00000568699 1129 ntBASIC15.86■□□□□ 0.13
PCDH9Q9HC56 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC15.86■□□□□ 0.13
PCDH9Q9HC56 GGT1-201ENST00000248923 2326 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
PCDH9Q9HC56 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
PCDH9Q9HC56 LPAR1-203ENST00000374431 3637 ntAPPRIS P2 TSL 1 (best) BASIC15.86■□□□□ 0.13
PCDH9Q9HC56 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
PCDH9Q9HC56 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
PCDH9Q9HC56 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
PCDH9Q9HC56 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
PCDH9Q9HC56 TAF1C-216ENST00000566732 2972 ntAPPRIS ALT2 TSL 2 BASIC15.86■□□□□ 0.13
PCDH9Q9HC56 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC15.86■□□□□ 0.13
PCDH9Q9HC56 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC15.86■□□□□ 0.13
PCDH9Q9HC56 ST3GAL3-208ENST00000361392 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
PCDH9Q9HC56 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
PCDH9Q9HC56 MCM3AP-AS1-203ENST00000421927 2280 ntTSL 2 BASIC15.85■□□□□ 0.13
PCDH9Q9HC56 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
PCDH9Q9HC56 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
PCDH9Q9HC56 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
PCDH9Q9HC56 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC15.85■□□□□ 0.13
PCDH9Q9HC56 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
PCDH9Q9HC56 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
PCDH9Q9HC56 AL121723.1-201ENST00000445194 1519 ntBASIC15.85■□□□□ 0.13
PCDH9Q9HC56 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
PCDH9Q9HC56 PDE1B-207ENST00000550620 2150 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
PCDH9Q9HC56 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
PCDH9Q9HC56 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC15.85■□□□□ 0.13
PCDH9Q9HC56 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
PCDH9Q9HC56 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC15.85■□□□□ 0.13
PCDH9Q9HC56 TOMM22P5-201ENST00000416399 439 ntBASIC15.85■□□□□ 0.13
PCDH9Q9HC56 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC15.85■□□□□ 0.13
PCDH9Q9HC56 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
PCDH9Q9HC56 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC15.85■□□□□ 0.13
PCDH9Q9HC56 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC15.85■□□□□ 0.13
PCDH9Q9HC56 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC15.85■□□□□ 0.13
PCDH9Q9HC56 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
PCDH9Q9HC56 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC15.85■□□□□ 0.13
PCDH9Q9HC56 AC104794.3-201ENST00000566840 1248 ntBASIC15.85■□□□□ 0.13
PCDH9Q9HC56 SRD5A3P1-201ENST00000603021 949 ntBASIC15.85■□□□□ 0.13
PCDH9Q9HC56 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC15.85■□□□□ 0.13
PCDH9Q9HC56 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
PCDH9Q9HC56 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC15.85■□□□□ 0.13
PCDH9Q9HC56 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC15.85■□□□□ 0.13
PCDH9Q9HC56 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
PCDH9Q9HC56 TOB2-201ENST00000327492 4561 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
PCDH9Q9HC56 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
PCDH9Q9HC56 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC15.85■□□□□ 0.13
PCDH9Q9HC56 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
PCDH9Q9HC56 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
PCDH9Q9HC56 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC15.85■□□□□ 0.13
PCDH9Q9HC56 TP73-209ENST00000603362 1668 ntTSL 5 BASIC15.85■□□□□ 0.13
PCDH9Q9HC56 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
PCDH9Q9HC56 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
PCDH9Q9HC56 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
PCDH9Q9HC56 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC15.85■□□□□ 0.13
PCDH9Q9HC56 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC15.85■□□□□ 0.13
PCDH9Q9HC56 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
PCDH9Q9HC56 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC15.85■□□□□ 0.13
PCDH9Q9HC56 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
PCDH9Q9HC56 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
PCDH9Q9HC56 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC15.84■□□□□ 0.13
PCDH9Q9HC56 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC15.84■□□□□ 0.13
PCDH9Q9HC56 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC15.84■□□□□ 0.13
PCDH9Q9HC56 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC15.84■□□□□ 0.13
PCDH9Q9HC56 C16orf52-202ENST00000542527 4360 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
PCDH9Q9HC56 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
PCDH9Q9HC56 ADORA1-201ENST00000309502 2896 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
PCDH9Q9HC56 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
PCDH9Q9HC56 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC15.84■□□□□ 0.13
PCDH9Q9HC56 ARC-201ENST00000356613 2948 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
PCDH9Q9HC56 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
PCDH9Q9HC56 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
PCDH9Q9HC56 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
PCDH9Q9HC56 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
PCDH9Q9HC56 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
PCDH9Q9HC56 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
PCDH9Q9HC56 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
PCDH9Q9HC56 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC15.84■□□□□ 0.13
PCDH9Q9HC56 HMGN1P19-201ENST00000436976 333 ntBASIC15.84■□□□□ 0.13
PCDH9Q9HC56 TSPY16P-201ENST00000449843 468 ntBASIC15.84■□□□□ 0.13
PCDH9Q9HC56 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
PCDH9Q9HC56 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC15.84■□□□□ 0.13
PCDH9Q9HC56 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC15.84■□□□□ 0.13
PCDH9Q9HC56 RNA5-8SN1-201ENST00000610460 153 ntBASIC15.84■□□□□ 0.13
PCDH9Q9HC56 RNA5-8SN5-202ENST00000612463 153 ntBASIC15.84■□□□□ 0.13
PCDH9Q9HC56 RNA5-8SN4-201ENST00000613359 153 ntBASIC15.84■□□□□ 0.13
PCDH9Q9HC56 RNA5-8SN5-201ENST00000619471 153 ntBASIC15.84■□□□□ 0.13
PCDH9Q9HC56 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
PCDH9Q9HC56 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC15.84■□□□□ 0.13
PCDH9Q9HC56 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
PCDH9Q9HC56 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
PCDH9Q9HC56 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC15.84■□□□□ 0.13
PCDH9Q9HC56 PXN-221ENST00000637617 3246 ntAPPRIS ALT2 TSL 5 BASIC15.84■□□□□ 0.13
PCDH9Q9HC56 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC15.84■□□□□ 0.13
PCDH9Q9HC56 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC15.84■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms