Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
TRAIPQ9BWF2 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC16.8■□□□□ 0.28
TRAIPQ9BWF2 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TRAIPQ9BWF2 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TRAIPQ9BWF2 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC16.79■□□□□ 0.28
TRAIPQ9BWF2 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
TRAIPQ9BWF2 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC16.79■□□□□ 0.28
TRAIPQ9BWF2 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TRAIPQ9BWF2 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
TRAIPQ9BWF2 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
TRAIPQ9BWF2 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC16.79■□□□□ 0.28
TRAIPQ9BWF2 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
TRAIPQ9BWF2 KRT8P35-201ENST00000483942 1338 ntBASIC16.79■□□□□ 0.28
TRAIPQ9BWF2 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
TRAIPQ9BWF2 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC16.79■□□□□ 0.28
TRAIPQ9BWF2 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TRAIPQ9BWF2 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC16.79■□□□□ 0.28
TRAIPQ9BWF2 CD8B2-202ENST00000417670 633 ntBASIC16.79■□□□□ 0.28
TRAIPQ9BWF2 AL592464.1-201ENST00000429389 429 ntTSL 2 BASIC16.79■□□□□ 0.28
TRAIPQ9BWF2 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC16.79■□□□□ 0.28
TRAIPQ9BWF2 AC009134.1-201ENST00000571939 443 ntTSL 3 BASIC16.79■□□□□ 0.28
TRAIPQ9BWF2 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC16.79■□□□□ 0.28
TRAIPQ9BWF2 AC145423.3-201ENST00000615987 467 ntBASIC16.79■□□□□ 0.28
TRAIPQ9BWF2 MIR6869-201ENST00000619434 62 ntBASIC16.79■□□□□ 0.28
TRAIPQ9BWF2 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC16.79■□□□□ 0.28
TRAIPQ9BWF2 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
TRAIPQ9BWF2 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC16.79■□□□□ 0.28
TRAIPQ9BWF2 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC16.79■□□□□ 0.28
TRAIPQ9BWF2 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
TRAIPQ9BWF2 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TRAIPQ9BWF2 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC16.79■□□□□ 0.28
TRAIPQ9BWF2 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
TRAIPQ9BWF2 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TRAIPQ9BWF2 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TRAIPQ9BWF2 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
TRAIPQ9BWF2 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TRAIPQ9BWF2 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
TRAIPQ9BWF2 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
TRAIPQ9BWF2 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
TRAIPQ9BWF2 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
TRAIPQ9BWF2 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
TRAIPQ9BWF2 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
TRAIPQ9BWF2 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
TRAIPQ9BWF2 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC16.78■□□□□ 0.28
TRAIPQ9BWF2 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC16.78■□□□□ 0.28
TRAIPQ9BWF2 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
TRAIPQ9BWF2 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRAIPQ9BWF2 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC16.78■□□□□ 0.28
TRAIPQ9BWF2 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
TRAIPQ9BWF2 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRAIPQ9BWF2 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC16.78■□□□□ 0.28
TRAIPQ9BWF2 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRAIPQ9BWF2 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC16.78■□□□□ 0.28
TRAIPQ9BWF2 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC16.78■□□□□ 0.28
TRAIPQ9BWF2 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC16.78■□□□□ 0.28
TRAIPQ9BWF2 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRAIPQ9BWF2 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRAIPQ9BWF2 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRAIPQ9BWF2 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRAIPQ9BWF2 TPO-206ENST00000382269 1155 ntTSL 5 BASIC16.78■□□□□ 0.28
TRAIPQ9BWF2 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
TRAIPQ9BWF2 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC16.78■□□□□ 0.28
TRAIPQ9BWF2 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
TRAIPQ9BWF2 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC16.78■□□□□ 0.28
TRAIPQ9BWF2 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC16.78■□□□□ 0.28
TRAIPQ9BWF2 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
TRAIPQ9BWF2 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRAIPQ9BWF2 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC16.78■□□□□ 0.28
TRAIPQ9BWF2 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
TRAIPQ9BWF2 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
TRAIPQ9BWF2 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRAIPQ9BWF2 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRAIPQ9BWF2 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
TRAIPQ9BWF2 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC16.78■□□□□ 0.28
TRAIPQ9BWF2 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
TRAIPQ9BWF2 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC16.78■□□□□ 0.28
TRAIPQ9BWF2 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
TRAIPQ9BWF2 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
TRAIPQ9BWF2 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC16.78■□□□□ 0.28
TRAIPQ9BWF2 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRAIPQ9BWF2 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRAIPQ9BWF2 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRAIPQ9BWF2 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
TRAIPQ9BWF2 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC16.77■□□□□ 0.28
TRAIPQ9BWF2 CRCP-201ENST00000338592 1393 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
TRAIPQ9BWF2 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC16.77■□□□□ 0.28
TRAIPQ9BWF2 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
TRAIPQ9BWF2 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
TRAIPQ9BWF2 PAQR6-214ENST00000613336 1599 ntTSL 3 BASIC16.77■□□□□ 0.28
TRAIPQ9BWF2 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC16.77■□□□□ 0.28
TRAIPQ9BWF2 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
TRAIPQ9BWF2 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
TRAIPQ9BWF2 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC16.77■□□□□ 0.28
TRAIPQ9BWF2 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC16.77■□□□□ 0.28
TRAIPQ9BWF2 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
TRAIPQ9BWF2 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC16.77■□□□□ 0.28
TRAIPQ9BWF2 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
TRAIPQ9BWF2 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC16.77■□□□□ 0.28
TRAIPQ9BWF2 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
TRAIPQ9BWF2 DSCR3-207ENST00000476950 937 ntTSL 2 BASIC16.77■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms