Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC14.76□□□□□ -0.05
VPS13AQ96RL7 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
VPS13AQ96RL7 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC14.76□□□□□ -0.05
VPS13AQ96RL7 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC14.76□□□□□ -0.05
VPS13AQ96RL7 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
VPS13AQ96RL7 MSRB3-206ENST00000535664 964 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
VPS13AQ96RL7 ORAOV1-211ENST00000542341 775 ntTSL 2 BASIC14.76□□□□□ -0.05
VPS13AQ96RL7 LINC02081-203ENST00000591384 867 ntTSL 3 BASIC14.76□□□□□ -0.05
VPS13AQ96RL7 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC14.76□□□□□ -0.05
VPS13AQ96RL7 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
VPS13AQ96RL7 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
VPS13AQ96RL7 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
VPS13AQ96RL7 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC14.76□□□□□ -0.05
VPS13AQ96RL7 KRT8P31-201ENST00000504812 1408 ntBASIC14.76□□□□□ -0.05
VPS13AQ96RL7 EMP1-211ENST00000544053 1436 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
VPS13AQ96RL7 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC14.76□□□□□ -0.05
VPS13AQ96RL7 CCDC51-206ENST00000447018 1461 ntTSL 2 BASIC14.76□□□□□ -0.05
VPS13AQ96RL7 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC14.76□□□□□ -0.05
VPS13AQ96RL7 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
VPS13AQ96RL7 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
VPS13AQ96RL7 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC14.76□□□□□ -0.05
VPS13AQ96RL7 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
VPS13AQ96RL7 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC14.76□□□□□ -0.05
VPS13AQ96RL7 PPA2-204ENST00000354147 667 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
VPS13AQ96RL7 MANEA-202ENST00000369293 1076 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
VPS13AQ96RL7 PPA2-205ENST00000432483 859 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
VPS13AQ96RL7 APCDD1L-AS1-206ENST00000445984 566 ntTSL 3 BASIC14.76□□□□□ -0.05
VPS13AQ96RL7 APCDD1L-AS1-208ENST00000448374 546 ntTSL 4 BASIC14.76□□□□□ -0.05
VPS13AQ96RL7 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
VPS13AQ96RL7 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
VPS13AQ96RL7 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
VPS13AQ96RL7 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
VPS13AQ96RL7 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
VPS13AQ96RL7 CTSV-201ENST00000259470 1546 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
VPS13AQ96RL7 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC14.76□□□□□ -0.05
VPS13AQ96RL7 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
VPS13AQ96RL7 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
VPS13AQ96RL7 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
VPS13AQ96RL7 CUTA-203ENST00000374500 937 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
VPS13AQ96RL7 PEMT-204ENST00000395783 1008 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
VPS13AQ96RL7 SMAD9-IT1-201ENST00000437983 504 ntTSL 3 BASIC14.75□□□□□ -0.05
VPS13AQ96RL7 AC026470.1-201ENST00000478038 846 ntBASIC14.75□□□□□ -0.05
VPS13AQ96RL7 RTN4RL2-203ENST00000533205 637 ntTSL 3 BASIC14.75□□□□□ -0.05
VPS13AQ96RL7 IFI27L1-212ENST00000557218 413 ntTSL 3 BASIC14.75□□□□□ -0.05
VPS13AQ96RL7 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC14.75□□□□□ -0.05
VPS13AQ96RL7 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
VPS13AQ96RL7 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC14.75□□□□□ -0.05
VPS13AQ96RL7 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC14.75□□□□□ -0.05
VPS13AQ96RL7 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
VPS13AQ96RL7 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC14.75□□□□□ -0.05
VPS13AQ96RL7 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
VPS13AQ96RL7 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
VPS13AQ96RL7 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
VPS13AQ96RL7 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC14.75□□□□□ -0.05
VPS13AQ96RL7 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC14.75□□□□□ -0.05
VPS13AQ96RL7 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC14.75□□□□□ -0.05
VPS13AQ96RL7 CRYBB3-201ENST00000215855 867 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
VPS13AQ96RL7 RPL35-201ENST00000348462 455 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
VPS13AQ96RL7 SOX2-OT-208ENST00000477928 902 ntTSL 2 BASIC14.75□□□□□ -0.05
VPS13AQ96RL7 TCL1A-205ENST00000555202 717 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
VPS13AQ96RL7 AC099811.3-201ENST00000586351 425 ntTSL 3 BASIC14.75□□□□□ -0.05
VPS13AQ96RL7 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
VPS13AQ96RL7 CYP4F23P-201ENST00000593402 1579 ntBASIC14.75□□□□□ -0.05
VPS13AQ96RL7 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC14.75□□□□□ -0.05
VPS13AQ96RL7 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
VPS13AQ96RL7 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC14.75□□□□□ -0.05
VPS13AQ96RL7 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
VPS13AQ96RL7 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
VPS13AQ96RL7 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
VPS13AQ96RL7 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
VPS13AQ96RL7 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
VPS13AQ96RL7 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
VPS13AQ96RL7 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
VPS13AQ96RL7 ANKDD1A-202ENST00000395720 1518 ntTSL 5 BASIC14.75□□□□□ -0.05
VPS13AQ96RL7 OST4-201ENST00000429985 559 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
VPS13AQ96RL7 LINC01598-205ENST00000508763 719 ntTSL 5 BASIC14.75□□□□□ -0.05
VPS13AQ96RL7 PMEL-214ENST00000550447 901 ntTSL 3 BASIC14.75□□□□□ -0.05
VPS13AQ96RL7 AC015712.5-201ENST00000558568 564 ntTSL 2 BASIC14.75□□□□□ -0.05
VPS13AQ96RL7 RN7SL470P-201ENST00000583069 259 ntBASIC14.75□□□□□ -0.05
VPS13AQ96RL7 TREX1-206ENST00000629913 945 ntAPPRIS P1 BASIC14.75□□□□□ -0.05
VPS13AQ96RL7 AC011451.3-201ENST00000634951 582 ntTSL 3 BASIC14.75□□□□□ -0.05
VPS13AQ96RL7 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC14.74□□□□□ -0.05
VPS13AQ96RL7 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC14.74□□□□□ -0.05
VPS13AQ96RL7 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
VPS13AQ96RL7 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
VPS13AQ96RL7 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
VPS13AQ96RL7 ZMIZ1-AS1-203ENST00000456353 2878 ntTSL 2 BASIC14.74□□□□□ -0.05
VPS13AQ96RL7 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
VPS13AQ96RL7 ATP5H-202ENST00000344546 553 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
VPS13AQ96RL7 NACA-202ENST00000393891 1059 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
VPS13AQ96RL7 HDDC2-202ENST00000398153 918 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
VPS13AQ96RL7 CTHRC1-202ENST00000415886 571 ntTSL 2 BASIC14.74□□□□□ -0.05
VPS13AQ96RL7 HNRNPA1P36-201ENST00000521313 955 ntBASIC14.74□□□□□ -0.05
VPS13AQ96RL7 CCDC86-203ENST00000545580 697 ntAPPRIS ALT2 TSL 3 BASIC14.74□□□□□ -0.05
VPS13AQ96RL7 AC019294.2-203ENST00000569596 594 ntTSL 3 BASIC14.74□□□□□ -0.05
VPS13AQ96RL7 SHBG-210ENST00000572262 984 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
VPS13AQ96RL7 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
VPS13AQ96RL7 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
VPS13AQ96RL7 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
VPS13AQ96RL7 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 70.8 ms