Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 AC112504.1-201ENST00000623415 1841 ntBASIC15.33■□□□□ 0.04
HMGB4Q8WW32 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC15.33■□□□□ 0.04
HMGB4Q8WW32 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
HMGB4Q8WW32 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
HMGB4Q8WW32 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
HMGB4Q8WW32 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
HMGB4Q8WW32 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
HMGB4Q8WW32 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
HMGB4Q8WW32 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC15.33■□□□□ 0.04
HMGB4Q8WW32 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
HMGB4Q8WW32 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
HMGB4Q8WW32 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
HMGB4Q8WW32 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HMGB4Q8WW32 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HMGB4Q8WW32 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HMGB4Q8WW32 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HMGB4Q8WW32 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HMGB4Q8WW32 FEM1B-201ENST00000306917 7122 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HMGB4Q8WW32 AC092127.1-201ENST00000567093 3455 ntBASIC15.32■□□□□ 0.04
HMGB4Q8WW32 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
HMGB4Q8WW32 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
HMGB4Q8WW32 AL391005.1-201ENST00000623953 2435 ntBASIC15.32■□□□□ 0.04
HMGB4Q8WW32 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC15.32■□□□□ 0.04
HMGB4Q8WW32 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
HMGB4Q8WW32 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
HMGB4Q8WW32 AATBC-203ENST00000448247 1889 ntTSL 2 BASIC15.32■□□□□ 0.04
HMGB4Q8WW32 BOLA3-201ENST00000295326 444 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
HMGB4Q8WW32 CLIC1-206ENST00000375779 1127 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
HMGB4Q8WW32 ELK2AP-201ENST00000392510 1007 ntBASIC15.32■□□□□ 0.04
HMGB4Q8WW32 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
HMGB4Q8WW32 LSM5-207ENST00000410044 687 ntTSL 3 BASIC15.32■□□□□ 0.04
HMGB4Q8WW32 POM121L8P-201ENST00000417732 1281 ntBASIC15.32■□□□□ 0.04
HMGB4Q8WW32 POM121L9P-203ENST00000441984 1285 ntBASIC15.32■□□□□ 0.04
HMGB4Q8WW32 RPL35A-205ENST00000448864 549 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HMGB4Q8WW32 AL391280.1-201ENST00000506969 1062 ntBASIC15.32■□□□□ 0.04
HMGB4Q8WW32 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC15.32■□□□□ 0.04
HMGB4Q8WW32 RERG-205ENST00000537647 935 ntTSL 2 BASIC15.32■□□□□ 0.04
HMGB4Q8WW32 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC15.32■□□□□ 0.04
HMGB4Q8WW32 AC079328.1-201ENST00000560358 952 ntBASIC15.32■□□□□ 0.04
HMGB4Q8WW32 AC073413.1-201ENST00000603927 732 ntBASIC15.32■□□□□ 0.04
HMGB4Q8WW32 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
HMGB4Q8WW32 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC15.32■□□□□ 0.04
HMGB4Q8WW32 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC15.32■□□□□ 0.04
HMGB4Q8WW32 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HMGB4Q8WW32 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
HMGB4Q8WW32 AL596257.1-201ENST00000641463 2694 ntBASIC15.32■□□□□ 0.04
HMGB4Q8WW32 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HMGB4Q8WW32 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
HMGB4Q8WW32 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
HMGB4Q8WW32 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC15.32■□□□□ 0.04
HMGB4Q8WW32 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
HMGB4Q8WW32 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
HMGB4Q8WW32 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HMGB4Q8WW32 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HMGB4Q8WW32 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HMGB4Q8WW32 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
HMGB4Q8WW32 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
HMGB4Q8WW32 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
HMGB4Q8WW32 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HMGB4Q8WW32 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC15.31■□□□□ 0.04
HMGB4Q8WW32 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
HMGB4Q8WW32 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC15.31■□□□□ 0.04
HMGB4Q8WW32 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC15.31■□□□□ 0.04
HMGB4Q8WW32 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
HMGB4Q8WW32 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC15.31■□□□□ 0.04
HMGB4Q8WW32 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HMGB4Q8WW32 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HMGB4Q8WW32 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC15.31■□□□□ 0.04
HMGB4Q8WW32 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
HMGB4Q8WW32 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
HMGB4Q8WW32 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC15.31■□□□□ 0.04
HMGB4Q8WW32 SUPT20HL2-201ENST00000486479 2409 ntBASIC15.31■□□□□ 0.04
HMGB4Q8WW32 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HMGB4Q8WW32 DEF8-202ENST00000418391 852 ntTSL 2 BASIC15.31■□□□□ 0.04
HMGB4Q8WW32 UPF3AP2-201ENST00000457924 1132 ntBASIC15.31■□□□□ 0.04
HMGB4Q8WW32 AC129492.3-201ENST00000498285 460 ntAPPRIS P1 TSL 4 BASIC15.31■□□□□ 0.04
HMGB4Q8WW32 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC15.31■□□□□ 0.04
HMGB4Q8WW32 AC044849.1-201ENST00000519737 1188 ntBASIC15.31■□□□□ 0.04
HMGB4Q8WW32 IFITM3-202ENST00000526811 543 ntAPPRIS ALT1 TSL 5 BASIC15.31■□□□□ 0.04
HMGB4Q8WW32 AC104758.2-201ENST00000562716 483 ntTSL 3 BASIC15.31■□□□□ 0.04
HMGB4Q8WW32 AC092634.5-202ENST00000587736 928 ntTSL 2 BASIC15.31■□□□□ 0.04
HMGB4Q8WW32 KLK11-210ENST00000600362 759 ntTSL 3 BASIC15.31■□□□□ 0.04
HMGB4Q8WW32 ZACNP1-201ENST00000612259 710 ntBASIC15.31■□□□□ 0.04
HMGB4Q8WW32 AC138649.2-201ENST00000615886 705 ntBASIC15.31■□□□□ 0.04
HMGB4Q8WW32 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
HMGB4Q8WW32 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC15.31■□□□□ 0.04
HMGB4Q8WW32 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HMGB4Q8WW32 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
HMGB4Q8WW32 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
HMGB4Q8WW32 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
HMGB4Q8WW32 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC15.31■□□□□ 0.04
HMGB4Q8WW32 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
HMGB4Q8WW32 ZNF750-202ENST00000572562 1513 ntTSL 2 BASIC15.31■□□□□ 0.04
HMGB4Q8WW32 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
HMGB4Q8WW32 AC245123.1-202ENST00000612422 1719 ntTSL 5 BASIC15.31■□□□□ 0.04
HMGB4Q8WW32 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC15.31■□□□□ 0.04
HMGB4Q8WW32 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HMGB4Q8WW32 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
HMGB4Q8WW32 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC15.31■□□□□ 0.04
HMGB4Q8WW32 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 52.5 ms