Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC10.67□□□□□ -0.7
PRKDCP78527 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
PRKDCP78527 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC10.67□□□□□ -0.7
PRKDCP78527 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC10.67□□□□□ -0.7
PRKDCP78527 LINC02417-201ENST00000542449 515 ntTSL 2 BASIC10.67□□□□□ -0.7
PRKDCP78527 GLT8D2-204ENST00000547583 862 ntTSL 5 BASIC10.67□□□□□ -0.7
PRKDCP78527 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
PRKDCP78527 FAS-202ENST00000352159 1722 ntTSL 5 BASIC10.67□□□□□ -0.7
PRKDCP78527 AC120498.9-201ENST00000339021 3867 ntBASIC10.67□□□□□ -0.7
PRKDCP78527 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
PRKDCP78527 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC10.67□□□□□ -0.7
PRKDCP78527 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
PRKDCP78527 KRTAP2-2-201ENST00000398477 733 ntAPPRIS P2 BASIC10.67□□□□□ -0.7
PRKDCP78527 TMEM14C-205ENST00000541412 1177 ntAPPRIS P1 TSL 2 BASIC10.67□□□□□ -0.7
PRKDCP78527 AC073578.2-201ENST00000618927 464 ntTSL 4 BASIC10.67□□□□□ -0.7
PRKDCP78527 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
PRKDCP78527 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC10.67□□□□□ -0.7
PRKDCP78527 KYAT1-201ENST00000302586 1903 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
PRKDCP78527 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC10.67□□□□□ -0.7
PRKDCP78527 SERF1B-204ENST00000506542 1666 ntTSL 3 BASIC10.67□□□□□ -0.7
PRKDCP78527 PGAP2-227ENST00000496834 1530 ntTSL 2 BASIC10.67□□□□□ -0.7
PRKDCP78527 FUCA1P1-201ENST00000374476 1351 ntBASIC10.66□□□□□ -0.7
PRKDCP78527 API5-202ENST00000420461 2009 ntTSL 2 BASIC10.66□□□□□ -0.7
PRKDCP78527 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC10.66□□□□□ -0.7
PRKDCP78527 NRSN2-201ENST00000382285 1047 ntAPPRIS P1 TSL 2 BASIC10.66□□□□□ -0.7
PRKDCP78527 HNRNPABP1-201ENST00000406003 734 ntBASIC10.66□□□□□ -0.7
PRKDCP78527 DDX39B-AS1-208ENST00000420520 516 ntTSL 3 BASIC10.66□□□□□ -0.7
PRKDCP78527 EEF1DP5-201ENST00000431410 772 ntBASIC10.66□□□□□ -0.7
PRKDCP78527 AL663074.1-201ENST00000436642 299 ntTSL 3 BASIC10.66□□□□□ -0.7
PRKDCP78527 ASGR2-203ENST00000446679 879 ntAPPRIS ALT2 TSL 1 (best) BASIC10.66□□□□□ -0.7
PRKDCP78527 RAMP3-203ENST00000496212 543 ntAPPRIS ALT2 TSL 4 BASIC10.66□□□□□ -0.7
PRKDCP78527 NR4A1-209ENST00000548232 1101 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
PRKDCP78527 AC091588.3-201ENST00000583442 770 ntTSL 3 BASIC10.66□□□□□ -0.7
PRKDCP78527 LINC01588-216ENST00000623502 975 ntTSL 2 BASIC10.66□□□□□ -0.7
PRKDCP78527 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC10.66□□□□□ -0.7
PRKDCP78527 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC10.66□□□□□ -0.7
PRKDCP78527 AL360270.3-201ENST00000609118 1348 ntBASIC10.66□□□□□ -0.7
PRKDCP78527 LAMA1-209ENST00000638611 1310 ntTSL 5 BASIC10.66□□□□□ -0.7
PRKDCP78527 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
PRKDCP78527 TMEM9-202ENST00000367332 1544 ntAPPRIS ALT1 TSL 2 BASIC10.66□□□□□ -0.7
PRKDCP78527 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
PRKDCP78527 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC10.66□□□□□ -0.7
PRKDCP78527 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC10.66□□□□□ -0.7
PRKDCP78527 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC10.66□□□□□ -0.7
PRKDCP78527 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
PRKDCP78527 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC10.66□□□□□ -0.7
PRKDCP78527 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC10.66□□□□□ -0.7
PRKDCP78527 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
PRKDCP78527 CALR3-201ENST00000269881 1292 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
PRKDCP78527 AC093609.1-201ENST00000434020 952 ntTSL 2 BASIC10.66□□□□□ -0.7
PRKDCP78527 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC10.66□□□□□ -0.7
PRKDCP78527 RN7SL602P-201ENST00000578326 324 ntBASIC10.66□□□□□ -0.7
PRKDCP78527 RN7SL718P-201ENST00000581254 303 ntBASIC10.66□□□□□ -0.7
PRKDCP78527 NEK4P3-201ENST00000604859 544 ntBASIC10.66□□□□□ -0.7
PRKDCP78527 AC008906.2-201ENST00000606656 474 ntTSL 2 BASIC10.66□□□□□ -0.7
PRKDCP78527 LINC00969-294ENST00000627609 992 ntTSL 5 BASIC10.66□□□□□ -0.7
PRKDCP78527 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
PRKDCP78527 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC10.66□□□□□ -0.7
PRKDCP78527 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
PRKDCP78527 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC10.66□□□□□ -0.7
PRKDCP78527 PIFO-201ENST00000369737 746 ntTSL 2 BASIC10.66□□□□□ -0.7
PRKDCP78527 ADARB2-AS1-201ENST00000381301 625 ntTSL 2 BASIC10.66□□□□□ -0.7
PRKDCP78527 PGAP2-207ENST00000463452 931 ntAPPRIS P1 TSL 2 BASIC10.66□□□□□ -0.7
PRKDCP78527 NKAPP1-204ENST00000555168 557 ntTSL 4 BASIC10.66□□□□□ -0.7
PRKDCP78527 TMEM202-AS1-201ENST00000562573 723 ntTSL 3 BASIC10.66□□□□□ -0.7
PRKDCP78527 MIR4254-201ENST00000581063 76 ntBASIC10.66□□□□□ -0.7
PRKDCP78527 AP000322.3-201ENST00000608665 388 ntBASIC10.66□□□□□ -0.7
PRKDCP78527 CCL18-201ENST00000616054 1324 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
PRKDCP78527 RANBP1-208ENST00000430524 1389 ntTSL 3 BASIC10.66□□□□□ -0.7
PRKDCP78527 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC10.66□□□□□ -0.7
PRKDCP78527 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
PRKDCP78527 TMBIM7P-202ENST00000641474 1516 ntBASIC10.65□□□□□ -0.7
PRKDCP78527 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
PRKDCP78527 TRBV4-1-201ENST00000390357 373 ntAPPRIS P1 BASIC10.65□□□□□ -0.7
PRKDCP78527 TRBV4-2-201ENST00000390392 455 ntAPPRIS P1 BASIC10.65□□□□□ -0.7
PRKDCP78527 AC068831.5-201ENST00000557387 328 ntBASIC10.65□□□□□ -0.7
PRKDCP78527 PGPEP1-203ENST00000595066 762 ntTSL 2 BASIC10.65□□□□□ -0.7
PRKDCP78527 CSH2-207ENST00000613718 666 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
PRKDCP78527 Metazoa_SRP.210-201ENST00000637921 244 ntBASIC10.65□□□□□ -0.7
PRKDCP78527 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC10.65□□□□□ -0.7
PRKDCP78527 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC10.65□□□□□ -0.7
PRKDCP78527 C1orf87-202ENST00000450089 1307 ntTSL 5 BASIC10.65□□□□□ -0.7
PRKDCP78527 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC10.65□□□□□ -0.7
PRKDCP78527 NECTIN1-203ENST00000341398 1377 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
PRKDCP78527 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
PRKDCP78527 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC10.65□□□□□ -0.7
PRKDCP78527 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC10.65□□□□□ -0.7
PRKDCP78527 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC10.65□□□□□ -0.7
PRKDCP78527 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
PRKDCP78527 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC10.65□□□□□ -0.7
PRKDCP78527 RPRD2-201ENST00000369067 1043 ntAPPRIS ALT2 TSL 2 BASIC10.65□□□□□ -0.7
PRKDCP78527 DEFB123-201ENST00000376309 467 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
PRKDCP78527 AC013436.1-201ENST00000425077 422 ntTSL 3 BASIC10.65□□□□□ -0.7
PRKDCP78527 IGLV9-49-201ENST00000427632 409 ntAPPRIS P1 BASIC10.65□□□□□ -0.7
PRKDCP78527 TGFBI-207ENST00000508076 1034 ntTSL 2 BASIC10.65□□□□□ -0.7
PRKDCP78527 AC011489.1-201ENST00000586744 690 ntTSL 3 BASIC10.65□□□□□ -0.7
PRKDCP78527 COQ4-204ENST00000608951 781 ntTSL 2 BASIC10.65□□□□□ -0.7
PRKDCP78527 CTSH-218ENST00000615999 972 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
PRKDCP78527 KRT33A-201ENST00000007735 1287 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
PRKDCP78527 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
Retrieved 100 of 98,524 protein–RNA pairs in 136.4 ms