Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
FOXA3P55318 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
FOXA3P55318 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC11.59□□□□□ -0.55
FOXA3P55318 MED22-202ENST00000371999 987 ntTSL 3 BASIC11.59□□□□□ -0.55
FOXA3P55318 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC11.59□□□□□ -0.55
FOXA3P55318 RAB17-203ENST00000409576 466 ntTSL 3 BASIC11.59□□□□□ -0.55
FOXA3P55318 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC11.59□□□□□ -0.55
FOXA3P55318 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC11.59□□□□□ -0.55
FOXA3P55318 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC11.59□□□□□ -0.55
FOXA3P55318 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC11.59□□□□□ -0.55
FOXA3P55318 AC024267.1-201ENST00000582320 895 ntBASIC11.59□□□□□ -0.55
FOXA3P55318 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC11.59□□□□□ -0.55
FOXA3P55318 AL009183.1-201ENST00000603760 355 ntBASIC11.59□□□□□ -0.55
FOXA3P55318 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC11.59□□□□□ -0.55
FOXA3P55318 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC11.59□□□□□ -0.55
FOXA3P55318 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC11.59□□□□□ -0.55
FOXA3P55318 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
FOXA3P55318 ARRB1-202ENST00000420843 3336 ntAPPRIS ALT1 TSL 1 (best) BASIC11.59□□□□□ -0.55
FOXA3P55318 AC011462.1-202ENST00000540732 1960 ntAPPRIS P1 TSL 2 BASIC11.59□□□□□ -0.55
FOXA3P55318 MIRLET7BHG-201ENST00000360737 4560 ntTSL 2 BASIC11.59□□□□□ -0.55
FOXA3P55318 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC11.59□□□□□ -0.55
FOXA3P55318 MTA3-202ENST00000405592 5832 ntTSL 2 BASIC11.59□□□□□ -0.55
FOXA3P55318 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
FOXA3P55318 EML4-203ENST00000402711 3568 ntAPPRIS ALT2 TSL 1 (best) BASIC11.59□□□□□ -0.55
FOXA3P55318 EMILIN1-201ENST00000380320 3943 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
FOXA3P55318 B3GNT5-202ENST00000460419 3368 ntAPPRIS P1 TSL 2 BASIC11.59□□□□□ -0.55
FOXA3P55318 XRCC3-211ENST00000555055 2584 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
FOXA3P55318 ITGB2-203ENST00000355153 2913 ntAPPRIS P1 TSL 2 BASIC11.59□□□□□ -0.55
FOXA3P55318 CDYL-205ENST00000449732 2139 ntTSL 2 BASIC11.59□□□□□ -0.55
FOXA3P55318 POLN-210ENST00000511885 3253 ntAPPRIS P1 TSL 5 BASIC11.59□□□□□ -0.55
FOXA3P55318 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC11.59□□□□□ -0.55
FOXA3P55318 AL356585.2-201ENST00000625078 2396 ntBASIC11.59□□□□□ -0.55
FOXA3P55318 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC11.59□□□□□ -0.55
FOXA3P55318 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC11.58□□□□□ -0.55
FOXA3P55318 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC11.58□□□□□ -0.55
FOXA3P55318 AP1B1-201ENST00000317368 3903 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
FOXA3P55318 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
FOXA3P55318 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
FOXA3P55318 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC11.58□□□□□ -0.56
FOXA3P55318 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC11.58□□□□□ -0.56
FOXA3P55318 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
FOXA3P55318 HDAC11-213ENST00000437379 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC11.58□□□□□ -0.56
FOXA3P55318 CDH3-201ENST00000264012 4929 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
FOXA3P55318 GRIN1-207ENST00000371560 3640 ntAPPRIS ALT1 TSL 1 (best) BASIC11.58□□□□□ -0.56
FOXA3P55318 NR1H3-221ENST00000481889 1704 ntTSL 5 BASIC11.58□□□□□ -0.56
FOXA3P55318 TNN-202ENST00000621086 4234 ntTSL 5 BASIC11.58□□□□□ -0.56
FOXA3P55318 MYO1C-218ENST00000575158 4804 ntAPPRIS P3 TSL 5 BASIC11.58□□□□□ -0.56
FOXA3P55318 GOPC-202ENST00000368498 4450 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
FOXA3P55318 TCAF2-202ENST00000411935 2906 ntTSL 5 BASIC11.58□□□□□ -0.56
FOXA3P55318 DGKD-201ENST00000264057 6297 ntAPPRIS P3 TSL 1 (best) BASIC11.58□□□□□ -0.56
FOXA3P55318 TIPARP-201ENST00000295924 4109 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
FOXA3P55318 UBFD1-207ENST00000567212 4727 ntAPPRIS ALT2 TSL 2 BASIC11.58□□□□□ -0.56
FOXA3P55318 CSAD-203ENST00000379846 1962 ntTSL 5 BASIC11.58□□□□□ -0.56
FOXA3P55318 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC11.58□□□□□ -0.56
FOXA3P55318 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
FOXA3P55318 ARFGAP1-212ENST00000519604 3191 ntTSL 2 BASIC11.58□□□□□ -0.56
FOXA3P55318 FBRS-201ENST00000287468 2811 ntAPPRIS P1 TSL 5 BASIC11.58□□□□□ -0.56
FOXA3P55318 PPFIA4-204ENST00000447715 6349 ntAPPRIS ALT2 TSL 1 (best) BASIC11.58□□□□□ -0.56
FOXA3P55318 C9orf152-201ENST00000400613 2717 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
FOXA3P55318 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC11.58□□□□□ -0.56
FOXA3P55318 FADS2-201ENST00000257261 2964 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
FOXA3P55318 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC11.58□□□□□ -0.56
FOXA3P55318 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC11.58□□□□□ -0.56
FOXA3P55318 DSE-201ENST00000331677 7237 ntAPPRIS P1 TSL 5 BASIC11.58□□□□□ -0.56
FOXA3P55318 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC11.58□□□□□ -0.56
FOXA3P55318 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
FOXA3P55318 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
FOXA3P55318 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
FOXA3P55318 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
FOXA3P55318 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
FOXA3P55318 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC11.58□□□□□ -0.56
FOXA3P55318 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC11.58□□□□□ -0.56
FOXA3P55318 ATP6V0CP3-201ENST00000417255 467 ntBASIC11.58□□□□□ -0.56
FOXA3P55318 ISCU-203ENST00000431221 799 ntTSL 2 BASIC11.58□□□□□ -0.56
FOXA3P55318 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
FOXA3P55318 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC11.58□□□□□ -0.56
FOXA3P55318 CCDC74BP1-201ENST00000508880 1123 ntBASIC11.58□□□□□ -0.56
FOXA3P55318 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC11.58□□□□□ -0.56
FOXA3P55318 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC11.58□□□□□ -0.56
FOXA3P55318 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC11.58□□□□□ -0.56
FOXA3P55318 THTPA-204ENST00000554970 569 ntTSL 4 BASIC11.58□□□□□ -0.56
FOXA3P55318 THTPA-206ENST00000556015 535 ntTSL 3 BASIC11.58□□□□□ -0.56
FOXA3P55318 AC021087.4-201ENST00000563761 564 ntBASIC11.58□□□□□ -0.56
FOXA3P55318 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
FOXA3P55318 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC11.58□□□□□ -0.56
FOXA3P55318 PTPRS-204ENST00000587303 6353 ntAPPRIS ALT2 TSL 1 (best) BASIC11.58□□□□□ -0.56
FOXA3P55318 AC008608.2-201ENST00000606089 416 ntBASIC11.58□□□□□ -0.56
FOXA3P55318 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC11.58□□□□□ -0.56
FOXA3P55318 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC11.58□□□□□ -0.56
FOXA3P55318 RBL1-201ENST00000344359 3225 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
FOXA3P55318 GRIP2-204ENST00000619221 7977 ntAPPRIS P5 TSL 5 BASIC11.58□□□□□ -0.56
FOXA3P55318 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC11.58□□□□□ -0.56
FOXA3P55318 ANK1-205ENST00000347528 8237 ntAPPRIS P4 TSL 1 (best) BASIC11.58□□□□□ -0.56
FOXA3P55318 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
FOXA3P55318 ASPH-214ENST00000519234 2874 ntTSL 5 BASIC11.58□□□□□ -0.56
FOXA3P55318 CYP1B1-AS1-201ENST00000413828 1781 ntTSL 5 BASIC11.58□□□□□ -0.56
FOXA3P55318 TNS2-219ENST00000552570 4714 ntAPPRIS ALT2 TSL 5 BASIC11.58□□□□□ -0.56
FOXA3P55318 VCP-201ENST00000358901 4370 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
FOXA3P55318 TONSL-201ENST00000409379 4502 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
FOXA3P55318 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
Retrieved 100 of 98,524 protein–RNA pairs in 56.3 ms