Protein–RNA interactions for Protein: P02549

SPTA1, Spectrin alpha chain, erythrocytic 1, humanhuman

Predictions only

Length 2,419 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1P02549 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC13.84□□□□□ -0.19
SPTA1P02549 TPM1-202ENST00000288398 1295 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
SPTA1P02549 TOMM7-201ENST00000358435 778 ntAPPRIS P2 TSL 1 (best) BASIC13.84□□□□□ -0.19
SPTA1P02549 ACTBP8-201ENST00000403258 1108 ntBASIC13.84□□□□□ -0.19
SPTA1P02549 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC13.84□□□□□ -0.19
SPTA1P02549 AC242376.1-201ENST00000559033 726 ntBASIC13.84□□□□□ -0.19
SPTA1P02549 AC008805.1-201ENST00000590892 364 ntBASIC13.84□□□□□ -0.19
SPTA1P02549 AC009955.4-201ENST00000597192 544 ntBASIC13.84□□□□□ -0.19
SPTA1P02549 FO393412.1-201ENST00000619841 382 ntBASIC13.84□□□□□ -0.19
SPTA1P02549 GLUD1P2-203ENST00000631118 486 ntTSL 3 BASIC13.84□□□□□ -0.19
SPTA1P02549 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
SPTA1P02549 DDR1-225ENST00000376568 3894 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
SPTA1P02549 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
SPTA1P02549 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
SPTA1P02549 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
SPTA1P02549 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC13.84□□□□□ -0.19
SPTA1P02549 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
SPTA1P02549 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
SPTA1P02549 SERPING1-204ENST00000378324 1751 ntAPPRIS ALT2 TSL 2 BASIC13.84□□□□□ -0.19
SPTA1P02549 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC13.84□□□□□ -0.19
SPTA1P02549 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC13.84□□□□□ -0.19
SPTA1P02549 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
SPTA1P02549 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC13.84□□□□□ -0.19
SPTA1P02549 MBTD1-201ENST00000376381 1420 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
SPTA1P02549 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
SPTA1P02549 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC13.84□□□□□ -0.19
SPTA1P02549 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
SPTA1P02549 B9D1-203ENST00000395615 805 ntTSL 3 BASIC13.84□□□□□ -0.19
SPTA1P02549 TRO-205ENST00000399736 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
SPTA1P02549 LINC01433-201ENST00000419003 697 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
SPTA1P02549 PAQR9-AS1-203ENST00000497652 516 ntTSL 3 BASIC13.84□□□□□ -0.19
SPTA1P02549 TPM1-223ENST00000560445 485 ntTSL 3 BASIC13.84□□□□□ -0.19
SPTA1P02549 AL118516.1-201ENST00000564152 670 ntBASIC13.84□□□□□ -0.19
SPTA1P02549 LDLRAD4-208ENST00000586765 844 ntTSL 2 BASIC13.84□□□□□ -0.19
SPTA1P02549 FAM32A-204ENST00000588367 798 ntTSL 2 BASIC13.84□□□□□ -0.19
SPTA1P02549 HIST1H3C-201ENST00000612966 411 ntAPPRIS P1 BASIC13.84□□□□□ -0.19
SPTA1P02549 PTPN20CP-201ENST00000614090 920 ntBASIC13.84□□□□□ -0.19
SPTA1P02549 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC13.84□□□□□ -0.19
SPTA1P02549 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
SPTA1P02549 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
SPTA1P02549 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
SPTA1P02549 HIGD1A-202ENST00000418900 1322 ntAPPRIS P1 TSL 2 BASIC13.84□□□□□ -0.19
SPTA1P02549 EVA1A-202ENST00000393913 1802 ntAPPRIS P2 TSL 1 (best) BASIC13.84□□□□□ -0.19
SPTA1P02549 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC13.84□□□□□ -0.19
SPTA1P02549 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
SPTA1P02549 SLC16A1-207ENST00000538576 4374 ntAPPRIS P1 TSL 2 BASIC13.84□□□□□ -0.19
SPTA1P02549 AC078925.2-201ENST00000624013 1973 ntBASIC13.83□□□□□ -0.19
SPTA1P02549 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
SPTA1P02549 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC13.83□□□□□ -0.19
SPTA1P02549 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC13.83□□□□□ -0.19
SPTA1P02549 SNPH-202ENST00000381873 4995 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.19
SPTA1P02549 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC13.83□□□□□ -0.19
SPTA1P02549 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
SPTA1P02549 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.19
SPTA1P02549 LINC01006-202ENST00000418309 640 ntTSL 3 BASIC13.83□□□□□ -0.19
SPTA1P02549 TREX1-202ENST00000444177 1200 ntTSL 1 (best) BASIC13.83□□□□□ -0.19
SPTA1P02549 IMPA1-203ENST00000449740 1180 ntTSL 1 (best) BASIC13.83□□□□□ -0.19
SPTA1P02549 AL138731.1-201ENST00000452624 739 ntTSL 3 BASIC13.83□□□□□ -0.19
SPTA1P02549 AC130709.1-201ENST00000484779 1212 ntBASIC13.83□□□□□ -0.19
SPTA1P02549 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC13.83□□□□□ -0.19
SPTA1P02549 AL031713.1-201ENST00000564813 661 ntBASIC13.83□□□□□ -0.19
SPTA1P02549 AC093567.1-201ENST00000590649 877 ntTSL 3 BASIC13.83□□□□□ -0.19
SPTA1P02549 IRF3-215ENST00000596822 823 ntTSL 3 BASIC13.83□□□□□ -0.19
SPTA1P02549 AC242376.2-201ENST00000619355 883 ntBASIC13.83□□□□□ -0.19
SPTA1P02549 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC13.83□□□□□ -0.19
SPTA1P02549 RNF170-209ENST00000534961 4116 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
SPTA1P02549 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC13.83□□□□□ -0.2
SPTA1P02549 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC13.83□□□□□ -0.2
SPTA1P02549 GRIN2C-201ENST00000293190 4261 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
SPTA1P02549 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC13.83□□□□□ -0.2
SPTA1P02549 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
SPTA1P02549 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
SPTA1P02549 KIAA1614-AS1-201ENST00000415647 1440 ntTSL 2 BASIC13.83□□□□□ -0.2
SPTA1P02549 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC13.83□□□□□ -0.2
SPTA1P02549 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC13.83□□□□□ -0.2
SPTA1P02549 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.2
SPTA1P02549 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC13.83□□□□□ -0.2
SPTA1P02549 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC13.83□□□□□ -0.2
SPTA1P02549 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.2
SPTA1P02549 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.2
SPTA1P02549 FGFR3-201ENST00000260795 4132 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
SPTA1P02549 PITPNM1-216ENST00000534749 4189 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
SPTA1P02549 CALCA-201ENST00000331587 843 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
SPTA1P02549 HBB-201ENST00000335295 628 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
SPTA1P02549 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC13.83□□□□□ -0.2
SPTA1P02549 AC069208.1-205ENST00000456299 576 ntTSL 4 BASIC13.83□□□□□ -0.2
SPTA1P02549 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC13.83□□□□□ -0.2
SPTA1P02549 MRPL49-209ENST00000534078 518 ntTSL 2 BASIC13.83□□□□□ -0.2
SPTA1P02549 AC005324.6-201ENST00000587972 613 ntBASIC13.83□□□□□ -0.2
SPTA1P02549 SMIM22-209ENST00000591870 355 ntAPPRIS ALT2 TSL 2 BASIC13.83□□□□□ -0.2
SPTA1P02549 AL132994.2-201ENST00000603120 687 ntBASIC13.83□□□□□ -0.2
SPTA1P02549 HDDC2-204ENST00000608295 879 ntTSL 5 BASIC13.83□□□□□ -0.2
SPTA1P02549 AC090164.2-201ENST00000611487 516 ntBASIC13.83□□□□□ -0.2
SPTA1P02549 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC13.83□□□□□ -0.2
SPTA1P02549 TMEM106A-202ENST00000541594 1330 ntTSL 2 BASIC13.83□□□□□ -0.2
SPTA1P02549 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC13.83□□□□□ -0.2
SPTA1P02549 FAM168A-204ENST00000450446 1364 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
SPTA1P02549 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC13.83□□□□□ -0.2
SPTA1P02549 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC13.83□□□□□ -0.2
SPTA1P02549 ABCG4-205ENST00000619701 3852 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms