Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC16.68■□□□□ 0.26
RNF40O75150 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC16.68■□□□□ 0.26
RNF40O75150 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC16.68■□□□□ 0.26
RNF40O75150 AC022726.2-201ENST00000634673 547 ntBASIC16.68■□□□□ 0.26
RNF40O75150 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
RNF40O75150 PAK6-202ENST00000455577 4215 ntTSL 2 BASIC16.68■□□□□ 0.26
RNF40O75150 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
RNF40O75150 ABCG1-201ENST00000343687 3037 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
RNF40O75150 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
RNF40O75150 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
RNF40O75150 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC16.68■□□□□ 0.26
RNF40O75150 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC16.68■□□□□ 0.26
RNF40O75150 ABR-228ENST00000574437 3196 ntTSL 5 BASIC16.68■□□□□ 0.26
RNF40O75150 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
RNF40O75150 SMARCA4-207ENST00000541122 5139 ntAPPRIS P4 TSL 5 BASIC16.68■□□□□ 0.26
RNF40O75150 ADAM23-202ENST00000374415 2714 ntAPPRIS ALT1 TSL 5 BASIC16.68■□□□□ 0.26
RNF40O75150 ZBTB17-202ENST00000375743 2745 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
RNF40O75150 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
RNF40O75150 TRIM46-202ENST00000368382 3127 ntTSL 2 BASIC16.68■□□□□ 0.26
RNF40O75150 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
RNF40O75150 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC16.67■□□□□ 0.26
RNF40O75150 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC16.67■□□□□ 0.26
RNF40O75150 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC16.67■□□□□ 0.26
RNF40O75150 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
RNF40O75150 ADAMTS14-202ENST00000373208 5269 ntAPPRIS P4 TSL 2 BASIC16.67■□□□□ 0.26
RNF40O75150 RUNX3-201ENST00000308873 3861 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
RNF40O75150 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
RNF40O75150 LINC01184-204ENST00000501702 2977 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
RNF40O75150 CYB5D2-201ENST00000301391 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
RNF40O75150 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC16.67■□□□□ 0.26
RNF40O75150 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC16.67■□□□□ 0.26
RNF40O75150 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
RNF40O75150 SLC1A7-206ENST00000620347 2873 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
RNF40O75150 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC16.67■□□□□ 0.26
RNF40O75150 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
RNF40O75150 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
RNF40O75150 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC16.67■□□□□ 0.26
RNF40O75150 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
RNF40O75150 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
RNF40O75150 APOBEC3H-202ENST00000401756 1023 ntAPPRIS ALT2 TSL 3 BASIC16.67■□□□□ 0.26
RNF40O75150 ATP5G2P4-201ENST00000442175 420 ntBASIC16.67■□□□□ 0.26
RNF40O75150 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
RNF40O75150 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC16.67■□□□□ 0.26
RNF40O75150 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC16.67■□□□□ 0.26
RNF40O75150 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC16.67■□□□□ 0.26
RNF40O75150 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC16.67■□□□□ 0.26
RNF40O75150 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC16.67■□□□□ 0.26
RNF40O75150 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC16.67■□□□□ 0.26
RNF40O75150 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC16.67■□□□□ 0.26
RNF40O75150 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC16.67■□□□□ 0.26
RNF40O75150 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC16.67■□□□□ 0.26
RNF40O75150 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC16.67■□□□□ 0.26
RNF40O75150 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
RNF40O75150 LHX6-207ENST00000541397 2942 ntTSL 2 BASIC16.67■□□□□ 0.26
RNF40O75150 ZEB1-AS1-208ENST00000607166 2503 ntBASIC16.67■□□□□ 0.26
RNF40O75150 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
RNF40O75150 PITPNM2-202ENST00000320201 6736 ntAPPRIS P3 TSL 5 BASIC16.67■□□□□ 0.26
RNF40O75150 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC16.67■□□□□ 0.26
RNF40O75150 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
RNF40O75150 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
RNF40O75150 TIFA-201ENST00000361717 4157 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
RNF40O75150 COL6A2-201ENST00000300527 3461 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
RNF40O75150 KIAA0930-203ENST00000391627 2623 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
RNF40O75150 PBX3-203ENST00000373487 2902 ntTSL 5 BASIC16.66■□□□□ 0.26
RNF40O75150 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC16.66■□□□□ 0.26
RNF40O75150 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
RNF40O75150 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
RNF40O75150 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
RNF40O75150 COL6A2-202ENST00000310645 3446 ntTSL 5 BASIC16.66■□□□□ 0.26
RNF40O75150 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
RNF40O75150 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
RNF40O75150 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
RNF40O75150 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
RNF40O75150 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
RNF40O75150 CHRNB4-201ENST00000261751 2623 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
RNF40O75150 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
RNF40O75150 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC16.66■□□□□ 0.26
RNF40O75150 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC16.66■□□□□ 0.26
RNF40O75150 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
RNF40O75150 U91328.1-201ENST00000437528 223 ntBASIC16.66■□□□□ 0.26
RNF40O75150 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC16.66■□□□□ 0.26
RNF40O75150 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC16.66■□□□□ 0.26
RNF40O75150 RN7SL618P-201ENST00000477850 296 ntBASIC16.66■□□□□ 0.26
RNF40O75150 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC16.66■□□□□ 0.26
RNF40O75150 MIR6752-201ENST00000618442 71 ntBASIC16.66■□□□□ 0.26
RNF40O75150 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC16.66■□□□□ 0.26
RNF40O75150 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC16.66■□□□□ 0.26
RNF40O75150 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC16.66■□□□□ 0.26
RNF40O75150 ERN2-202ENST00000457008 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
RNF40O75150 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
RNF40O75150 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC16.66■□□□□ 0.26
RNF40O75150 AXL-202ENST00000359092 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
RNF40O75150 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
RNF40O75150 RTEL1-205ENST00000370018 4955 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
RNF40O75150 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
RNF40O75150 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
RNF40O75150 SLC35C1-201ENST00000314134 4171 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
RNF40O75150 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
RNF40O75150 HNRNPUL1-205ENST00000593587 2725 ntTSL 2 BASIC16.65■□□□□ 0.26
RNF40O75150 MROH4P-201ENST00000431302 1578 ntBASIC16.65■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms