Protein–RNA interactions for Protein: Q9NWW5

CLN6, Ceroid-lipofuscinosis neuronal protein 6, humanhuman

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6Q9NWW5 BAIAP2-220ENST00000575712 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
CLN6Q9NWW5 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC14.09□□□□□ -0.15
CLN6Q9NWW5 PCDHGB7-201ENST00000398594 4765 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
CLN6Q9NWW5 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
CLN6Q9NWW5 PTPRN-201ENST00000295718 3784 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
CLN6Q9NWW5 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CLN6Q9NWW5 ATP6V1H-201ENST00000355221 2365 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
CLN6Q9NWW5 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC14.09□□□□□ -0.15
CLN6Q9NWW5 AL591623.1-201ENST00000417786 1960 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
CLN6Q9NWW5 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CLN6Q9NWW5 ATP13A2-202ENST00000341676 3681 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
CLN6Q9NWW5 RIMS1-214ENST00000518273 4116 ntTSL 5 BASIC14.09□□□□□ -0.15
CLN6Q9NWW5 LINC02538-201ENST00000609107 4569 ntTSL 2 BASIC14.08□□□□□ -0.15
CLN6Q9NWW5 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC14.08□□□□□ -0.15
CLN6Q9NWW5 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
CLN6Q9NWW5 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
CLN6Q9NWW5 SERTAD2-201ENST00000313349 5549 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
CLN6Q9NWW5 GRSF1-201ENST00000254799 6666 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.15
CLN6Q9NWW5 MROH2A-201ENST00000389758 5355 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.15
CLN6Q9NWW5 VWCE-202ENST00000335613 3640 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
CLN6Q9NWW5 DHTKD1-201ENST00000263035 5159 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CLN6Q9NWW5 TAOK2-204ENST00000543033 4072 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
CLN6Q9NWW5 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CLN6Q9NWW5 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC14.08□□□□□ -0.16
CLN6Q9NWW5 SPATA16-201ENST00000351008 2106 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CLN6Q9NWW5 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CLN6Q9NWW5 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC14.08□□□□□ -0.16
CLN6Q9NWW5 GRM1-203ENST00000361719 6754 ntAPPRIS P3 TSL 5 BASIC14.08□□□□□ -0.16
CLN6Q9NWW5 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
CLN6Q9NWW5 ARID4B-201ENST00000264183 4995 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CLN6Q9NWW5 ANK1-205ENST00000347528 8237 ntAPPRIS P4 TSL 1 (best) BASIC14.08□□□□□ -0.16
CLN6Q9NWW5 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.16
CLN6Q9NWW5 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
CLN6Q9NWW5 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC14.08□□□□□ -0.16
CLN6Q9NWW5 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
CLN6Q9NWW5 GHSR-202ENST00000427970 912 ntBASIC14.08□□□□□ -0.16
CLN6Q9NWW5 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC14.08□□□□□ -0.16
CLN6Q9NWW5 KRT18P2-201ENST00000447938 1258 ntBASIC14.08□□□□□ -0.16
CLN6Q9NWW5 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC14.08□□□□□ -0.16
CLN6Q9NWW5 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC14.08□□□□□ -0.16
CLN6Q9NWW5 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.16
CLN6Q9NWW5 AC145285.3-201ENST00000564603 959 ntBASIC14.08□□□□□ -0.16
CLN6Q9NWW5 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC14.08□□□□□ -0.16
CLN6Q9NWW5 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC14.08□□□□□ -0.16
CLN6Q9NWW5 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
CLN6Q9NWW5 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CLN6Q9NWW5 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC14.08□□□□□ -0.16
CLN6Q9NWW5 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
CLN6Q9NWW5 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
CLN6Q9NWW5 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC14.08□□□□□ -0.16
CLN6Q9NWW5 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
CLN6Q9NWW5 UBE3A-220ENST00000630424 5075 ntAPPRIS P3 TSL 5 BASIC14.08□□□□□ -0.16
CLN6Q9NWW5 PIDD1-201ENST00000347755 2998 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CLN6Q9NWW5 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
CLN6Q9NWW5 PXDN-201ENST00000252804 6808 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CLN6Q9NWW5 AKAP8P1-201ENST00000434743 1349 ntBASIC14.08□□□□□ -0.16
CLN6Q9NWW5 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC14.08□□□□□ -0.16
CLN6Q9NWW5 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC14.08□□□□□ -0.16
CLN6Q9NWW5 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC14.08□□□□□ -0.16
CLN6Q9NWW5 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
CLN6Q9NWW5 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
CLN6Q9NWW5 KIF19-202ENST00000389916 3643 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
CLN6Q9NWW5 AP000845.1-201ENST00000581677 2131 ntBASIC14.08□□□□□ -0.16
CLN6Q9NWW5 TET2-207ENST00000513237 10166 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
CLN6Q9NWW5 TET2-209ENST00000540549 10166 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.16
CLN6Q9NWW5 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC14.07□□□□□ -0.16
CLN6Q9NWW5 GID4-201ENST00000268719 4237 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLN6Q9NWW5 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLN6Q9NWW5 SLC9A7P1-202ENST00000556476 2239 ntBASIC14.07□□□□□ -0.16
CLN6Q9NWW5 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CLN6Q9NWW5 CDH20-201ENST00000262717 3882 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
CLN6Q9NWW5 ZDHHC3-201ENST00000296127 3101 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CLN6Q9NWW5 NRDC-201ENST00000352171 3691 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLN6Q9NWW5 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CLN6Q9NWW5 AC097359.2-201ENST00000604992 2389 ntBASIC14.07□□□□□ -0.16
CLN6Q9NWW5 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC14.07□□□□□ -0.16
CLN6Q9NWW5 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC14.07□□□□□ -0.16
CLN6Q9NWW5 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLN6Q9NWW5 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC14.07□□□□□ -0.16
CLN6Q9NWW5 FAM220BP-201ENST00000377689 816 ntBASIC14.07□□□□□ -0.16
CLN6Q9NWW5 CBR1-202ENST00000399191 838 ntTSL 3 BASIC14.07□□□□□ -0.16
CLN6Q9NWW5 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC14.07□□□□□ -0.16
CLN6Q9NWW5 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC14.07□□□□□ -0.16
CLN6Q9NWW5 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC14.07□□□□□ -0.16
CLN6Q9NWW5 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC14.07□□□□□ -0.16
CLN6Q9NWW5 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC14.07□□□□□ -0.16
CLN6Q9NWW5 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
CLN6Q9NWW5 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC14.07□□□□□ -0.16
CLN6Q9NWW5 AC034105.1-201ENST00000563488 319 ntBASIC14.07□□□□□ -0.16
CLN6Q9NWW5 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC14.07□□□□□ -0.16
CLN6Q9NWW5 NKG7-205ENST00000600427 520 ntTSL 3 BASIC14.07□□□□□ -0.16
CLN6Q9NWW5 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CLN6Q9NWW5 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC14.07□□□□□ -0.16
CLN6Q9NWW5 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CLN6Q9NWW5 AL928921.2-201ENST00000641325 2442 ntBASIC14.07□□□□□ -0.16
CLN6Q9NWW5 CYB561-201ENST00000360793 3001 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLN6Q9NWW5 ZMYM3-204ENST00000373982 1867 ntTSL 5 BASIC14.07□□□□□ -0.16
CLN6Q9NWW5 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC14.07□□□□□ -0.16
CLN6Q9NWW5 AC010327.5-201ENST00000586923 3061 ntBASIC14.07□□□□□ -0.16
CLN6Q9NWW5 SLC27A3-201ENST00000271857 3351 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 64.7 ms