Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.27
CHMP1AQ9HD42 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.27
CHMP1AQ9HD42 LGALSL-201ENST00000238875 3926 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
CHMP1AQ9HD42 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.27
CHMP1AQ9HD42 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.27
CHMP1AQ9HD42 OLFML2A-203ENST00000373580 6425 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.27
CHMP1AQ9HD42 CDK17-201ENST00000261211 4157 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
CHMP1AQ9HD42 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC13.33□□□□□ -0.28
CHMP1AQ9HD42 TNS2-219ENST00000552570 4714 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.28
CHMP1AQ9HD42 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC13.33□□□□□ -0.28
CHMP1AQ9HD42 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC13.33□□□□□ -0.28
CHMP1AQ9HD42 FP325330.2-201ENST00000624219 5630 ntBASIC13.33□□□□□ -0.28
CHMP1AQ9HD42 RUNX3-201ENST00000308873 3861 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
CHMP1AQ9HD42 POM121-205ENST00000627934 5480 ntAPPRIS P3 TSL 5 BASIC13.33□□□□□ -0.28
CHMP1AQ9HD42 PCDHGA3-201ENST00000253812 4771 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
CHMP1AQ9HD42 PPIP5K1-209ENST00000420765 5718 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.28
CHMP1AQ9HD42 COL6A3-202ENST00000347401 8625 ntTSL 5 BASIC13.33□□□□□ -0.28
CHMP1AQ9HD42 COL6A3-209ENST00000472056 8628 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
CHMP1AQ9HD42 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
CHMP1AQ9HD42 RNF222-202ENST00000399398 3062 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
CHMP1AQ9HD42 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
CHMP1AQ9HD42 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
CHMP1AQ9HD42 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
CHMP1AQ9HD42 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
CHMP1AQ9HD42 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC13.33□□□□□ -0.28
CHMP1AQ9HD42 LBH-204ENST00000406087 559 ntTSL 4 BASIC13.33□□□□□ -0.28
CHMP1AQ9HD42 AL590627.1-203ENST00000421194 1026 ntBASIC13.33□□□□□ -0.28
CHMP1AQ9HD42 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC13.33□□□□□ -0.28
CHMP1AQ9HD42 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC13.33□□□□□ -0.28
CHMP1AQ9HD42 SPDYE11-202ENST00000450699 704 ntBASIC13.33□□□□□ -0.28
CHMP1AQ9HD42 AL139010.1-201ENST00000454878 894 ntBASIC13.33□□□□□ -0.28
CHMP1AQ9HD42 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC13.33□□□□□ -0.28
CHMP1AQ9HD42 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC13.33□□□□□ -0.28
CHMP1AQ9HD42 CCDC74BP1-201ENST00000508880 1123 ntBASIC13.33□□□□□ -0.28
CHMP1AQ9HD42 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC13.33□□□□□ -0.28
CHMP1AQ9HD42 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
CHMP1AQ9HD42 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC13.33□□□□□ -0.28
CHMP1AQ9HD42 SPDYE9P-201ENST00000570642 692 ntBASIC13.33□□□□□ -0.28
CHMP1AQ9HD42 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC13.33□□□□□ -0.28
CHMP1AQ9HD42 SPDYE10P-202ENST00000612005 668 ntBASIC13.33□□□□□ -0.28
CHMP1AQ9HD42 SPDYE8P-202ENST00000612377 668 ntBASIC13.33□□□□□ -0.28
CHMP1AQ9HD42 AC091812.2-201ENST00000619081 385 ntBASIC13.33□□□□□ -0.28
CHMP1AQ9HD42 AC092865.6-201ENST00000642101 219 ntBASIC13.33□□□□□ -0.28
CHMP1AQ9HD42 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
CHMP1AQ9HD42 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC13.33□□□□□ -0.28
CHMP1AQ9HD42 PWWP2A-201ENST00000307063 3346 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
CHMP1AQ9HD42 DPY19L2P2-201ENST00000312132 4078 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
CHMP1AQ9HD42 WDR17-205ENST00000508596 4294 ntAPPRIS ALT1 TSL 1 (best) BASIC13.33□□□□□ -0.28
CHMP1AQ9HD42 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC13.33□□□□□ -0.28
CHMP1AQ9HD42 PLCB3-202ENST00000325234 3946 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
CHMP1AQ9HD42 FAM9C-205ENST00000542843 5858 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
CHMP1AQ9HD42 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
CHMP1AQ9HD42 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
CHMP1AQ9HD42 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
CHMP1AQ9HD42 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
CHMP1AQ9HD42 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC13.33□□□□□ -0.28
CHMP1AQ9HD42 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC13.33□□□□□ -0.28
CHMP1AQ9HD42 RAPGEF4-201ENST00000397081 4299 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
CHMP1AQ9HD42 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
CHMP1AQ9HD42 TPO-201ENST00000329066 3138 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
CHMP1AQ9HD42 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC13.32□□□□□ -0.28
CHMP1AQ9HD42 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
CHMP1AQ9HD42 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC13.32□□□□□ -0.28
CHMP1AQ9HD42 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
CHMP1AQ9HD42 AC148477.4-201ENST00000613430 1793 ntBASIC13.32□□□□□ -0.28
CHMP1AQ9HD42 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
CHMP1AQ9HD42 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC13.32□□□□□ -0.28
CHMP1AQ9HD42 ZC3HAV1-204ENST00000471652 3182 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
CHMP1AQ9HD42 AC117489.1-201ENST00000625169 3217 ntBASIC13.32□□□□□ -0.28
CHMP1AQ9HD42 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC13.32□□□□□ -0.28
CHMP1AQ9HD42 NRP2-204ENST00000360409 6662 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
CHMP1AQ9HD42 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CHMP1AQ9HD42 SGTB-201ENST00000381007 5469 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CHMP1AQ9HD42 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CHMP1AQ9HD42 KRT8P37-201ENST00000451609 1420 ntBASIC13.32□□□□□ -0.28
CHMP1AQ9HD42 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC13.32□□□□□ -0.28
CHMP1AQ9HD42 FOXL1-201ENST00000320241 3655 ntAPPRIS P1 BASIC13.32□□□□□ -0.28
CHMP1AQ9HD42 NPHP3-ACAD11-201ENST00000471702 7784 ntTSL 2 BASIC13.32□□□□□ -0.28
CHMP1AQ9HD42 SYP-201ENST00000263233 2498 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CHMP1AQ9HD42 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
CHMP1AQ9HD42 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CHMP1AQ9HD42 ZEB1-AS1-208ENST00000607166 2503 ntBASIC13.32□□□□□ -0.28
CHMP1AQ9HD42 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CHMP1AQ9HD42 SERP1-201ENST00000239944 3171 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CHMP1AQ9HD42 MOB3C-203ENST00000371940 5725 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CHMP1AQ9HD42 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CHMP1AQ9HD42 RBPMS-201ENST00000287771 2974 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
CHMP1AQ9HD42 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
CHMP1AQ9HD42 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CHMP1AQ9HD42 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC13.32□□□□□ -0.28
CHMP1AQ9HD42 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
CHMP1AQ9HD42 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CHMP1AQ9HD42 HLA-H-201ENST00000383620 1096 ntBASIC13.32□□□□□ -0.28
CHMP1AQ9HD42 HNRNPA1P28-201ENST00000424481 961 ntBASIC13.32□□□□□ -0.28
CHMP1AQ9HD42 RPS8P6-201ENST00000426177 609 ntBASIC13.32□□□□□ -0.28
CHMP1AQ9HD42 AL645939.2-201ENST00000427340 991 ntBASIC13.32□□□□□ -0.28
CHMP1AQ9HD42 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC13.32□□□□□ -0.28
CHMP1AQ9HD42 FAM58CP-201ENST00000435741 640 ntBASIC13.32□□□□□ -0.28
CHMP1AQ9HD42 AL591424.1-201ENST00000442569 1213 ntBASIC13.32□□□□□ -0.28
CHMP1AQ9HD42 KRT18P3-201ENST00000451602 1288 ntBASIC13.32□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms