Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 PRKCZ-AS1-202ENST00000444529 622 ntTSL 3 BASIC13.09□□□□□ -0.31
COL12A1Q99715 Z82249.1-201ENST00000453866 568 ntTSL 4 BASIC13.09□□□□□ -0.31
COL12A1Q99715 AL078590.3-205ENST00000606039 465 ntTSL 5 BASIC13.09□□□□□ -0.31
COL12A1Q99715 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC13.09□□□□□ -0.31
COL12A1Q99715 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
COL12A1Q99715 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
COL12A1Q99715 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
COL12A1Q99715 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
COL12A1Q99715 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
COL12A1Q99715 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
COL12A1Q99715 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
COL12A1Q99715 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
COL12A1Q99715 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
COL12A1Q99715 NNMT-203ENST00000535401 1867 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
COL12A1Q99715 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC13.09□□□□□ -0.31
COL12A1Q99715 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC13.09□□□□□ -0.31
COL12A1Q99715 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC13.09□□□□□ -0.31
COL12A1Q99715 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
COL12A1Q99715 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
COL12A1Q99715 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC13.09□□□□□ -0.31
COL12A1Q99715 AC093673.1-201ENST00000429630 648 ntTSL 2 BASIC13.09□□□□□ -0.31
COL12A1Q99715 AC090820.1-201ENST00000519722 591 ntBASIC13.09□□□□□ -0.31
COL12A1Q99715 AC004466.1-201ENST00000599515 1080 ntBASIC13.09□□□□□ -0.31
COL12A1Q99715 KRTAP10-4-203ENST00000622352 1244 ntAPPRIS ALT2 TSL 5 BASIC13.09□□□□□ -0.31
COL12A1Q99715 TTC23L-209ENST00000638320 1185 ntAPPRIS ALT2 TSL 5 BASIC13.09□□□□□ -0.31
COL12A1Q99715 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
COL12A1Q99715 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC13.08□□□□□ -0.31
COL12A1Q99715 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.31
COL12A1Q99715 AC008536.3-201ENST00000623282 1599 ntBASIC13.08□□□□□ -0.31
COL12A1Q99715 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC13.08□□□□□ -0.31
COL12A1Q99715 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
COL12A1Q99715 SIGLEC20P-201ENST00000595243 1311 ntBASIC13.08□□□□□ -0.32
COL12A1Q99715 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
COL12A1Q99715 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
COL12A1Q99715 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
COL12A1Q99715 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
COL12A1Q99715 PCDHA12-202ENST00000613593 2588 ntBASIC13.08□□□□□ -0.32
COL12A1Q99715 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
COL12A1Q99715 AC007292.2-201ENST00000593524 1812 ntBASIC13.08□□□□□ -0.32
COL12A1Q99715 TSPY25P-201ENST00000429463 745 ntBASIC13.08□□□□□ -0.32
COL12A1Q99715 RPP40-203ENST00000464646 1042 ntTSL 5 BASIC13.08□□□□□ -0.32
COL12A1Q99715 AC083801.1-201ENST00000491689 358 ntBASIC13.08□□□□□ -0.32
COL12A1Q99715 AC106047.2-201ENST00000511723 743 ntBASIC13.08□□□□□ -0.32
COL12A1Q99715 PPCDC-205ENST00000563393 1149 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
COL12A1Q99715 PPCDC-208ENST00000567336 892 ntTSL 5 BASIC13.08□□□□□ -0.32
COL12A1Q99715 KRT17P4-206ENST00000584151 719 ntTSL 4 BASIC13.08□□□□□ -0.32
COL12A1Q99715 APOC4-202ENST00000592954 615 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
COL12A1Q99715 SIGLEC18P-201ENST00000602271 909 ntBASIC13.08□□□□□ -0.32
COL12A1Q99715 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC13.08□□□□□ -0.32
COL12A1Q99715 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
COL12A1Q99715 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
COL12A1Q99715 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.32
COL12A1Q99715 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC13.08□□□□□ -0.32
COL12A1Q99715 F10-201ENST00000375551 1509 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
COL12A1Q99715 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
COL12A1Q99715 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC13.08□□□□□ -0.32
COL12A1Q99715 FH-201ENST00000366560 1797 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
COL12A1Q99715 GTF3C6-201ENST00000329970 952 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
COL12A1Q99715 MYL4-202ENST00000393450 855 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
COL12A1Q99715 EFNA4-203ENST00000427683 1052 ntAPPRIS ALT2 TSL 2 BASIC13.08□□□□□ -0.32
COL12A1Q99715 AL157392.3-204ENST00000440878 397 ntTSL 3 BASIC13.08□□□□□ -0.32
COL12A1Q99715 HMGB3-204ENST00000448905 812 ntAPPRIS P2 TSL 1 (best) BASIC13.08□□□□□ -0.32
COL12A1Q99715 AC135178.1-201ENST00000458568 537 ntTSL 3 BASIC13.08□□□□□ -0.32
COL12A1Q99715 KLF3-AS1-203ENST00000504219 627 ntTSL 3 BASIC13.08□□□□□ -0.32
COL12A1Q99715 MSRB3-206ENST00000535664 964 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
COL12A1Q99715 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC13.08□□□□□ -0.32
COL12A1Q99715 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC13.08□□□□□ -0.32
COL12A1Q99715 MIR2392-201ENST00000584881 84 ntBASIC13.08□□□□□ -0.32
COL12A1Q99715 AC008735.2-201ENST00000589456 549 ntTSL 5 BASIC13.08□□□□□ -0.32
COL12A1Q99715 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
COL12A1Q99715 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.32
COL12A1Q99715 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC13.08□□□□□ -0.32
COL12A1Q99715 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
COL12A1Q99715 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC13.08□□□□□ -0.32
COL12A1Q99715 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
COL12A1Q99715 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC13.07□□□□□ -0.32
COL12A1Q99715 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
COL12A1Q99715 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC13.07□□□□□ -0.32
COL12A1Q99715 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
COL12A1Q99715 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC13.07□□□□□ -0.32
COL12A1Q99715 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
COL12A1Q99715 CTSL-201ENST00000340342 1436 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
COL12A1Q99715 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
COL12A1Q99715 TRAPPC3-201ENST00000373159 590 ntTSL 3 BASIC13.07□□□□□ -0.32
COL12A1Q99715 AL353150.1-201ENST00000456944 583 ntTSL 2 BASIC13.07□□□□□ -0.32
COL12A1Q99715 CD63-214ENST00000552692 949 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
COL12A1Q99715 ZNF530-203ENST00000597864 634 ntTSL 2 BASIC13.07□□□□□ -0.32
COL12A1Q99715 AP000357.2-201ENST00000633827 597 ntTSL 2 BASIC13.07□□□□□ -0.32
COL12A1Q99715 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
COL12A1Q99715 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
COL12A1Q99715 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC13.07□□□□□ -0.32
COL12A1Q99715 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC13.07□□□□□ -0.32
COL12A1Q99715 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC13.07□□□□□ -0.32
COL12A1Q99715 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
COL12A1Q99715 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
COL12A1Q99715 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
COL12A1Q99715 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
COL12A1Q99715 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
COL12A1Q99715 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
COL12A1Q99715 INPP5E-201ENST00000371712 3394 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 109.9 ms