Protein–RNA interactions for Protein: Q8WWI5

SLC44A1, Choline transporter-like protein 1, humanhuman

Predictions only

Length 657 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A1Q8WWI5 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
SLC44A1Q8WWI5 LILRP1-201ENST00000444199 1370 ntBASIC15.41■□□□□ 0.06
SLC44A1Q8WWI5 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC15.41■□□□□ 0.06
SLC44A1Q8WWI5 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
SLC44A1Q8WWI5 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC15.41■□□□□ 0.06
SLC44A1Q8WWI5 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
SLC44A1Q8WWI5 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
SLC44A1Q8WWI5 IL6R-201ENST00000344086 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
SLC44A1Q8WWI5 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
SLC44A1Q8WWI5 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
SLC44A1Q8WWI5 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
SLC44A1Q8WWI5 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
SLC44A1Q8WWI5 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
SLC44A1Q8WWI5 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC15.41■□□□□ 0.06
SLC44A1Q8WWI5 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC15.41■□□□□ 0.06
SLC44A1Q8WWI5 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC15.41■□□□□ 0.06
SLC44A1Q8WWI5 TOMM22P5-201ENST00000416399 439 ntBASIC15.41■□□□□ 0.06
SLC44A1Q8WWI5 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC15.41■□□□□ 0.06
SLC44A1Q8WWI5 SERBP1P3-201ENST00000459980 809 ntBASIC15.41■□□□□ 0.06
SLC44A1Q8WWI5 YBX1P5-201ENST00000509441 847 ntBASIC15.41■□□□□ 0.06
SLC44A1Q8WWI5 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
SLC44A1Q8WWI5 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC15.41■□□□□ 0.06
SLC44A1Q8WWI5 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
SLC44A1Q8WWI5 AL589739.1-201ENST00000607720 493 ntBASIC15.41■□□□□ 0.06
SLC44A1Q8WWI5 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
SLC44A1Q8WWI5 TARSL2-201ENST00000335968 3610 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.06
SLC44A1Q8WWI5 ABCC1-201ENST00000399408 6594 ntTSL 5 BASIC15.41■□□□□ 0.06
SLC44A1Q8WWI5 ABCC1-202ENST00000399410 6552 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
SLC44A1Q8WWI5 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
SLC44A1Q8WWI5 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
SLC44A1Q8WWI5 DUSP27-201ENST00000271385 3597 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
SLC44A1Q8WWI5 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
SLC44A1Q8WWI5 AC015656.1-201ENST00000624209 3578 ntBASIC15.41■□□□□ 0.06
SLC44A1Q8WWI5 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
SLC44A1Q8WWI5 MBD1-212ENST00000585672 2532 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
SLC44A1Q8WWI5 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
SLC44A1Q8WWI5 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
SLC44A1Q8WWI5 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SLC44A1Q8WWI5 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
SLC44A1Q8WWI5 ANKLE1-201ENST00000394458 3218 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SLC44A1Q8WWI5 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC15.4■□□□□ 0.06
SLC44A1Q8WWI5 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC15.4■□□□□ 0.06
SLC44A1Q8WWI5 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC15.4■□□□□ 0.06
SLC44A1Q8WWI5 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC15.4■□□□□ 0.06
SLC44A1Q8WWI5 FLJ16779-201ENST00000612722 7638 ntBASIC15.4■□□□□ 0.06
SLC44A1Q8WWI5 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
SLC44A1Q8WWI5 CNPY1-203ENST00000636372 2259 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
SLC44A1Q8WWI5 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
SLC44A1Q8WWI5 KCNT1-208ENST00000488444 3696 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
SLC44A1Q8WWI5 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SLC44A1Q8WWI5 C21orf58-202ENST00000397679 2900 ntAPPRIS ALT2 TSL 2 BASIC15.4■□□□□ 0.06
SLC44A1Q8WWI5 LHX6-207ENST00000541397 2942 ntTSL 2 BASIC15.4■□□□□ 0.06
SLC44A1Q8WWI5 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SLC44A1Q8WWI5 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SLC44A1Q8WWI5 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SLC44A1Q8WWI5 MIR1233-2-201ENST00000408138 82 ntBASIC15.4■□□□□ 0.06
SLC44A1Q8WWI5 MIR1233-1-201ENST00000408722 82 ntBASIC15.4■□□□□ 0.06
SLC44A1Q8WWI5 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
SLC44A1Q8WWI5 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC15.4■□□□□ 0.06
SLC44A1Q8WWI5 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC15.4■□□□□ 0.06
SLC44A1Q8WWI5 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC15.4■□□□□ 0.06
SLC44A1Q8WWI5 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC15.4■□□□□ 0.06
SLC44A1Q8WWI5 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
SLC44A1Q8WWI5 LINC01115-203ENST00000606068 577 ntBASIC15.4■□□□□ 0.06
SLC44A1Q8WWI5 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC15.4■□□□□ 0.06
SLC44A1Q8WWI5 AC009093.7-201ENST00000623853 1223 ntBASIC15.4■□□□□ 0.06
SLC44A1Q8WWI5 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC15.4■□□□□ 0.06
SLC44A1Q8WWI5 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC15.4■□□□□ 0.06
SLC44A1Q8WWI5 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC15.4■□□□□ 0.06
SLC44A1Q8WWI5 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SLC44A1Q8WWI5 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
SLC44A1Q8WWI5 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC15.4■□□□□ 0.06
SLC44A1Q8WWI5 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
SLC44A1Q8WWI5 RNF222-202ENST00000399398 3062 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
SLC44A1Q8WWI5 KLF4-201ENST00000374672 2813 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SLC44A1Q8WWI5 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC15.4■□□□□ 0.06
SLC44A1Q8WWI5 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
SLC44A1Q8WWI5 ZNF365-207ENST00000410046 3379 ntTSL 2 BASIC15.4■□□□□ 0.06
SLC44A1Q8WWI5 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC15.4■□□□□ 0.06
SLC44A1Q8WWI5 NFS1-203ENST00000374092 3012 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SLC44A1Q8WWI5 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SLC44A1Q8WWI5 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SLC44A1Q8WWI5 AC104581.4-201ENST00000623126 3052 ntBASIC15.4■□□□□ 0.06
SLC44A1Q8WWI5 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.06
SLC44A1Q8WWI5 MED20-201ENST00000265350 2438 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
SLC44A1Q8WWI5 AL928921.2-201ENST00000641325 2442 ntBASIC15.39■□□□□ 0.05
SLC44A1Q8WWI5 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC15.39■□□□□ 0.05
SLC44A1Q8WWI5 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC15.39■□□□□ 0.05
SLC44A1Q8WWI5 TTLL10-AS1-201ENST00000379317 3532 ntTSL 2 BASIC15.39■□□□□ 0.05
SLC44A1Q8WWI5 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC15.39■□□□□ 0.05
SLC44A1Q8WWI5 TRIM46-202ENST00000368382 3127 ntTSL 2 BASIC15.39■□□□□ 0.05
SLC44A1Q8WWI5 CETN4P-206ENST00000642099 2168 ntBASIC15.39■□□□□ 0.05
SLC44A1Q8WWI5 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
SLC44A1Q8WWI5 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC15.39■□□□□ 0.05
SLC44A1Q8WWI5 NMUR1-201ENST00000305141 3298 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
SLC44A1Q8WWI5 ARFGAP1-203ENST00000370283 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
SLC44A1Q8WWI5 RUNDC1-201ENST00000361677 3828 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
SLC44A1Q8WWI5 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
SLC44A1Q8WWI5 ACE-201ENST00000290863 2479 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
SLC44A1Q8WWI5 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms