Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC16.26■□□□□ 0.19
LIG3P49916 PDE8A-201ENST00000310298 3984 ntAPPRIS P4 TSL 1 (best) BASIC16.26■□□□□ 0.19
LIG3P49916 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
LIG3P49916 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC16.26■□□□□ 0.19
LIG3P49916 ADAMTS13-205ENST00000371916 4330 ntTSL 5 BASIC16.26■□□□□ 0.19
LIG3P49916 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC16.26■□□□□ 0.19
LIG3P49916 RFX2-222ENST00000592546 2578 ntAPPRIS ALT1 TSL 2 BASIC16.26■□□□□ 0.19
LIG3P49916 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
LIG3P49916 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
LIG3P49916 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
LIG3P49916 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC16.26■□□□□ 0.19
LIG3P49916 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC16.26■□□□□ 0.19
LIG3P49916 MTND6P24-201ENST00000440466 518 ntBASIC16.26■□□□□ 0.19
LIG3P49916 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC16.26■□□□□ 0.19
LIG3P49916 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
LIG3P49916 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
LIG3P49916 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC16.26■□□□□ 0.19
LIG3P49916 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
LIG3P49916 LITAF-210ENST00000571976 548 ntTSL 2 BASIC16.26■□□□□ 0.19
LIG3P49916 LITAF-214ENST00000574703 486 ntTSL 2 BASIC16.26■□□□□ 0.19
LIG3P49916 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
LIG3P49916 TNFRSF11A-205ENST00000616710 3809 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
LIG3P49916 KCP-206ENST00000613019 4853 ntAPPRIS P5 TSL 5 BASIC16.26■□□□□ 0.19
LIG3P49916 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
LIG3P49916 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
LIG3P49916 KIAA0895L-201ENST00000290881 3550 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
LIG3P49916 GRAMD4P3-201ENST00000621665 1669 ntBASIC16.26■□□□□ 0.19
LIG3P49916 SYT13-201ENST00000020926 5144 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
LIG3P49916 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
LIG3P49916 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC16.26■□□□□ 0.19
LIG3P49916 ALDH3A2-226ENST00000631291 3822 ntTSL 5 BASIC16.26■□□□□ 0.19
LIG3P49916 TCOF1-201ENST00000323668 4832 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
LIG3P49916 WDR77-201ENST00000235090 2576 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
LIG3P49916 CCNJ-201ENST00000265992 4115 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
LIG3P49916 MAMLD1-203ENST00000370401 4854 ntAPPRIS P3 TSL 5 BASIC16.25■□□□□ 0.19
LIG3P49916 NDRG4-217ENST00000562999 2931 ntTSL 5 BASIC16.25■□□□□ 0.19
LIG3P49916 SH3BP5L-201ENST00000366472 3861 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
LIG3P49916 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
LIG3P49916 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC16.25■□□□□ 0.19
LIG3P49916 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
LIG3P49916 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC16.25■□□□□ 0.19
LIG3P49916 MYD88-203ENST00000417037 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
LIG3P49916 FGFR1-201ENST00000326324 3816 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
LIG3P49916 FGFR1-204ENST00000356207 3824 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
LIG3P49916 TGIF2-201ENST00000373872 3406 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
LIG3P49916 ELF4-201ENST00000308167 4165 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
LIG3P49916 AGO3-201ENST00000246314 3211 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
LIG3P49916 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
LIG3P49916 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC16.25■□□□□ 0.19
LIG3P49916 ASAH1-258ENST00000637790 3042 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
LIG3P49916 AC004890.2-205ENST00000416232 2804 ntTSL 2 BASIC16.25■□□□□ 0.19
LIG3P49916 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
LIG3P49916 NUP50-201ENST00000347635 5233 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
LIG3P49916 DGCR9-201ENST00000609630 2415 ntBASIC16.25■□□□□ 0.19
LIG3P49916 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC16.25■□□□□ 0.19
LIG3P49916 DNMT3B-204ENST00000353855 4237 ntTSL 5 BASIC16.25■□□□□ 0.19
LIG3P49916 DDX20-201ENST00000369702 4212 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
LIG3P49916 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC16.25■□□□□ 0.19
LIG3P49916 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
LIG3P49916 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
LIG3P49916 VMA21-202ENST00000370361 693 ntTSL 5 BASIC16.25■□□□□ 0.19
LIG3P49916 AC092580.3-201ENST00000430932 139 ntBASIC16.25■□□□□ 0.19
LIG3P49916 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
LIG3P49916 SATB1-217ENST00000493952 626 ntTSL 3 BASIC16.25■□□□□ 0.19
LIG3P49916 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC16.25■□□□□ 0.19
LIG3P49916 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC16.25■□□□□ 0.19
LIG3P49916 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC16.25■□□□□ 0.19
LIG3P49916 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC16.25■□□□□ 0.19
LIG3P49916 BANF1P1-201ENST00000553684 263 ntBASIC16.25■□□□□ 0.19
LIG3P49916 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC16.25■□□□□ 0.19
LIG3P49916 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC16.25■□□□□ 0.19
LIG3P49916 RN7SL828P-201ENST00000607615 303 ntBASIC16.25■□□□□ 0.19
LIG3P49916 AL390754.1-201ENST00000619088 582 ntBASIC16.25■□□□□ 0.19
LIG3P49916 WLS-201ENST00000262348 2748 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
LIG3P49916 SCYL1-205ENST00000524944 2715 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
LIG3P49916 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
LIG3P49916 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
LIG3P49916 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC16.25■□□□□ 0.19
LIG3P49916 FAM219A-203ENST00000379080 3591 ntTSL 2 BASIC16.25■□□□□ 0.19
LIG3P49916 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
LIG3P49916 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
LIG3P49916 WARS2-202ENST00000369426 2811 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
LIG3P49916 FECH-201ENST00000262093 3853 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
LIG3P49916 OXTR-201ENST00000316793 4364 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
LIG3P49916 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
LIG3P49916 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
LIG3P49916 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC16.25■□□□□ 0.19
LIG3P49916 NTRK2-202ENST00000304053 8226 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
LIG3P49916 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
LIG3P49916 NR3C1-201ENST00000231509 3556 ntAPPRIS ALT1 TSL 1 (best) BASIC16.25■□□□□ 0.19
LIG3P49916 PTPN9-206ENST00000618819 7813 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
LIG3P49916 KIF6-203ENST00000394362 2394 ntTSL 5 BASIC16.24■□□□□ 0.19
LIG3P49916 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC16.24■□□□□ 0.19
LIG3P49916 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
LIG3P49916 CDH20-202ENST00000536675 2855 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
LIG3P49916 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC16.24■□□□□ 0.19
LIG3P49916 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
LIG3P49916 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC16.24■□□□□ 0.19
LIG3P49916 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC16.24■□□□□ 0.19
LIG3P49916 CPEB2-205ENST00000442003 6797 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 74.3 ms