Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 SSH2-211ENST00000590153 570 ntTSL 4 BASIC13.6□□□□□ -0.23
SOX2P48431 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC13.6□□□□□ -0.23
SOX2P48431 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC13.6□□□□□ -0.23
SOX2P48431 DISC1-222ENST00000622252 6927 ntAPPRIS ALT2 TSL 5 BASIC13.6□□□□□ -0.23
SOX2P48431 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
SOX2P48431 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
SOX2P48431 PRKD2-206ENST00000595515 3012 ntTSL 2 BASIC13.6□□□□□ -0.23
SOX2P48431 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
SOX2P48431 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC13.6□□□□□ -0.23
SOX2P48431 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
SOX2P48431 ACSL1-201ENST00000281455 3832 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
SOX2P48431 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC13.6□□□□□ -0.23
SOX2P48431 TMCC3-201ENST00000261226 5877 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
SOX2P48431 BVES-201ENST00000314641 5567 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
SOX2P48431 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
SOX2P48431 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC13.6□□□□□ -0.23
SOX2P48431 PTPRA-201ENST00000216877 3725 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
SOX2P48431 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
SOX2P48431 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
SOX2P48431 AC005840.4-201ENST00000541242 2494 ntBASIC13.59□□□□□ -0.23
SOX2P48431 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
SOX2P48431 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
SOX2P48431 CABLES2-201ENST00000279101 3785 ntAPPRIS P2 TSL 5 BASIC13.59□□□□□ -0.23
SOX2P48431 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
SOX2P48431 RAF1-201ENST00000251849 3300 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
SOX2P48431 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
SOX2P48431 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
SOX2P48431 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
SOX2P48431 MTHFR-210ENST00000641407 2387 ntBASIC13.59□□□□□ -0.23
SOX2P48431 PPP1R26P4-201ENST00000619065 3527 ntBASIC13.59□□□□□ -0.23
SOX2P48431 BTN1A1-201ENST00000244513 2895 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
SOX2P48431 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
SOX2P48431 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC13.59□□□□□ -0.23
SOX2P48431 FGFR3-203ENST00000352904 3733 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
SOX2P48431 DESI2-202ENST00000302550 4208 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
SOX2P48431 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
SOX2P48431 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC13.59□□□□□ -0.23
SOX2P48431 FAM163A-201ENST00000341785 2909 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
SOX2P48431 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
SOX2P48431 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC13.59□□□□□ -0.23
SOX2P48431 INPPL1-213ENST00000541756 4649 ntTSL 5 BASIC13.59□□□□□ -0.23
SOX2P48431 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC13.59□□□□□ -0.23
SOX2P48431 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
SOX2P48431 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC13.59□□□□□ -0.23
SOX2P48431 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC13.59□□□□□ -0.23
SOX2P48431 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC13.59□□□□□ -0.23
SOX2P48431 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
SOX2P48431 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC13.59□□□□□ -0.23
SOX2P48431 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC13.59□□□□□ -0.23
SOX2P48431 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
SOX2P48431 AC027601.4-201ENST00000611259 610 ntBASIC13.59□□□□□ -0.23
SOX2P48431 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
SOX2P48431 CDK17-201ENST00000261211 4157 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
SOX2P48431 PRKAG2-215ENST00000492843 2699 ntTSL 5 BASIC13.59□□□□□ -0.23
SOX2P48431 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
SOX2P48431 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
SOX2P48431 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC13.59□□□□□ -0.23
SOX2P48431 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
SOX2P48431 REXO1L2P-201ENST00000425429 2069 ntBASIC13.59□□□□□ -0.23
SOX2P48431 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
SOX2P48431 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC13.59□□□□□ -0.23
SOX2P48431 POU5F1-204ENST00000471529 1723 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
SOX2P48431 UBE2I-201ENST00000325437 2832 ntAPPRIS P1 TSL 3 BASIC13.59□□□□□ -0.23
SOX2P48431 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC13.58□□□□□ -0.23
SOX2P48431 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC13.58□□□□□ -0.23
SOX2P48431 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC13.58□□□□□ -0.23
SOX2P48431 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC13.58□□□□□ -0.23
SOX2P48431 AC011899.2-202ENST00000438047 4302 ntTSL 1 (best) BASIC13.58□□□□□ -0.23
SOX2P48431 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC13.58□□□□□ -0.23
SOX2P48431 MFSD11-211ENST00000588460 3612 ntAPPRIS P1 TSL 2 BASIC13.58□□□□□ -0.23
SOX2P48431 DDX20-201ENST00000369702 4212 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
SOX2P48431 COL8A2-201ENST00000303143 4447 ntAPPRIS P1 TSL 2 BASIC13.58□□□□□ -0.24
SOX2P48431 PCDHB16-201ENST00000609684 5001 ntAPPRIS P1 BASIC13.58□□□□□ -0.24
SOX2P48431 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.24
SOX2P48431 GRIN1-203ENST00000371550 3940 ntTSL 5 BASIC13.58□□□□□ -0.24
SOX2P48431 GAS2L1-209ENST00000618518 3382 ntAPPRIS P1 TSL 2 BASIC13.58□□□□□ -0.24
SOX2P48431 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC13.58□□□□□ -0.24
SOX2P48431 MAP3K11-208ENST00000530153 2830 ntTSL 2 BASIC13.58□□□□□ -0.24
SOX2P48431 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
SOX2P48431 NTNG1-208ENST00000370074 3048 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
SOX2P48431 AC112229.3-201ENST00000603767 3202 ntAPPRIS P1 TSL 2 BASIC13.58□□□□□ -0.24
SOX2P48431 AC013271.1-201ENST00000640669 3202 ntAPPRIS P1 TSL 2 BASIC13.58□□□□□ -0.24
SOX2P48431 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
SOX2P48431 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
SOX2P48431 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
SOX2P48431 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
SOX2P48431 KLK8-202ENST00000320838 456 ntTSL 5 BASIC13.58□□□□□ -0.24
SOX2P48431 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC13.58□□□□□ -0.24
SOX2P48431 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC13.58□□□□□ -0.24
SOX2P48431 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
SOX2P48431 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
SOX2P48431 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
SOX2P48431 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC13.58□□□□□ -0.24
SOX2P48431 AL590627.1-203ENST00000421194 1026 ntBASIC13.58□□□□□ -0.24
SOX2P48431 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC13.58□□□□□ -0.24
SOX2P48431 AL591424.1-201ENST00000442569 1213 ntBASIC13.58□□□□□ -0.24
SOX2P48431 SLC25A1P1-201ENST00000528351 927 ntBASIC13.58□□□□□ -0.24
SOX2P48431 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC13.58□□□□□ -0.24
SOX2P48431 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
SOX2P48431 SUOX-214ENST00000551841 906 ntTSL 3 BASIC13.58□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms