Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC15.93■□□□□ 0.14
PTPN9P43378 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC15.93■□□□□ 0.14
PTPN9P43378 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC15.93■□□□□ 0.14
PTPN9P43378 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC15.93■□□□□ 0.14
PTPN9P43378 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC15.93■□□□□ 0.14
PTPN9P43378 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC15.93■□□□□ 0.14
PTPN9P43378 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC15.93■□□□□ 0.14
PTPN9P43378 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC15.93■□□□□ 0.14
PTPN9P43378 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC15.93■□□□□ 0.14
PTPN9P43378 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC15.93■□□□□ 0.14
PTPN9P43378 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC15.93■□□□□ 0.14
PTPN9P43378 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
PTPN9P43378 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC15.93■□□□□ 0.14
PTPN9P43378 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC15.93■□□□□ 0.14
PTPN9P43378 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
PTPN9P43378 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC15.93■□□□□ 0.14
PTPN9P43378 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
PTPN9P43378 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC15.93■□□□□ 0.14
PTPN9P43378 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
PTPN9P43378 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
PTPN9P43378 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC15.93■□□□□ 0.14
PTPN9P43378 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
PTPN9P43378 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
PTPN9P43378 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
PTPN9P43378 REXO1L5P-201ENST00000622260 2098 ntBASIC15.93■□□□□ 0.14
PTPN9P43378 KRT8P14-201ENST00000414254 1442 ntBASIC15.93■□□□□ 0.14
PTPN9P43378 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
PTPN9P43378 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC15.93■□□□□ 0.14
PTPN9P43378 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
PTPN9P43378 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
PTPN9P43378 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC15.92■□□□□ 0.14
PTPN9P43378 PES1-204ENST00000402284 2144 ntTSL 5 BASIC15.92■□□□□ 0.14
PTPN9P43378 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
PTPN9P43378 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC15.92■□□□□ 0.14
PTPN9P43378 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC15.92■□□□□ 0.14
PTPN9P43378 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
PTPN9P43378 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC15.92■□□□□ 0.14
PTPN9P43378 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
PTPN9P43378 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC15.92■□□□□ 0.14
PTPN9P43378 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC15.92■□□□□ 0.14
PTPN9P43378 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC15.92■□□□□ 0.14
PTPN9P43378 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
PTPN9P43378 RNU1-114P-201ENST00000365297 166 ntBASIC15.92■□□□□ 0.14
PTPN9P43378 ACKR1-201ENST00000368121 1240 ntBASIC15.92■□□□□ 0.14
PTPN9P43378 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC15.92■□□□□ 0.14
PTPN9P43378 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC15.92■□□□□ 0.14
PTPN9P43378 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
PTPN9P43378 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC15.92■□□□□ 0.14
PTPN9P43378 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC15.92■□□□□ 0.14
PTPN9P43378 AC114812.1-204ENST00000449669 728 ntBASIC15.92■□□□□ 0.14
PTPN9P43378 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC15.92■□□□□ 0.14
PTPN9P43378 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC15.92■□□□□ 0.14
PTPN9P43378 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC15.92■□□□□ 0.14
PTPN9P43378 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC15.92■□□□□ 0.14
PTPN9P43378 CLUHP6-201ENST00000580789 941 ntBASIC15.92■□□□□ 0.14
PTPN9P43378 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC15.92■□□□□ 0.14
PTPN9P43378 CU634019.7-201ENST00000624153 1185 ntBASIC15.92■□□□□ 0.14
PTPN9P43378 FP236241.2-201ENST00000624906 1185 ntBASIC15.92■□□□□ 0.14
PTPN9P43378 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC15.92■□□□□ 0.14
PTPN9P43378 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC15.92■□□□□ 0.14
PTPN9P43378 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
PTPN9P43378 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC15.92■□□□□ 0.14
PTPN9P43378 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
PTPN9P43378 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
PTPN9P43378 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC15.92■□□□□ 0.14
PTPN9P43378 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC15.92■□□□□ 0.14
PTPN9P43378 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
PTPN9P43378 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC15.92■□□□□ 0.14
PTPN9P43378 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
PTPN9P43378 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
PTPN9P43378 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC15.91■□□□□ 0.14
PTPN9P43378 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
PTPN9P43378 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC15.91■□□□□ 0.14
PTPN9P43378 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
PTPN9P43378 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
PTPN9P43378 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
PTPN9P43378 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
PTPN9P43378 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
PTPN9P43378 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC15.91■□□□□ 0.14
PTPN9P43378 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC15.91■□□□□ 0.14
PTPN9P43378 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC15.91■□□□□ 0.14
PTPN9P43378 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
PTPN9P43378 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC15.91■□□□□ 0.14
PTPN9P43378 AP001063.1-201ENST00000568332 529 ntBASIC15.91■□□□□ 0.14
PTPN9P43378 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC15.91■□□□□ 0.14
PTPN9P43378 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC15.91■□□□□ 0.14
PTPN9P43378 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC15.91■□□□□ 0.14
PTPN9P43378 METTL26-214ENST00000614890 801 ntTSL 3 BASIC15.91■□□□□ 0.14
PTPN9P43378 AP005019.2-201ENST00000615104 511 ntBASIC15.91■□□□□ 0.14
PTPN9P43378 AL033527.5-201ENST00000641382 801 ntBASIC15.91■□□□□ 0.14
PTPN9P43378 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC15.91■□□□□ 0.14
PTPN9P43378 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC15.91■□□□□ 0.14
PTPN9P43378 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
PTPN9P43378 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC15.91■□□□□ 0.14
PTPN9P43378 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
PTPN9P43378 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
PTPN9P43378 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
PTPN9P43378 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
PTPN9P43378 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC15.91■□□□□ 0.14
PTPN9P43378 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 61.3 ms