Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 AP005901.3-201ENST00000581666 415 ntTSL 3 BASIC19.64■□□□□ 0.73
COL18A1P39060 ZNF772-207ENST00000601768 482 ntTSL 3 BASIC19.64■□□□□ 0.73
COL18A1P39060 AC022001.2-201ENST00000607849 580 ntTSL 2 BASIC19.64■□□□□ 0.73
COL18A1P39060 LINC01783-202ENST00000614408 828 ntBASIC19.64■□□□□ 0.73
COL18A1P39060 BX284668.2-205ENST00000619677 828 ntBASIC19.64■□□□□ 0.73
COL18A1P39060 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
COL18A1P39060 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC19.64■□□□□ 0.73
COL18A1P39060 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
COL18A1P39060 LINC02199-201ENST00000506655 2702 ntBASIC19.64■□□□□ 0.73
COL18A1P39060 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC19.64■□□□□ 0.73
COL18A1P39060 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
COL18A1P39060 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC19.64■□□□□ 0.73
COL18A1P39060 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC19.64■□□□□ 0.73
COL18A1P39060 CASP6-202ENST00000352981 1347 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
COL18A1P39060 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
COL18A1P39060 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
COL18A1P39060 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
COL18A1P39060 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
COL18A1P39060 CSRP1-201ENST00000340006 1952 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL18A1P39060 MAP2K6-205ENST00000589647 1512 ntTSL 5 BASIC19.63■□□□□ 0.73
COL18A1P39060 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
COL18A1P39060 KRTAP19-5-201ENST00000334151 461 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
COL18A1P39060 AL672291.1-201ENST00000417047 462 ntTSL 3 BASIC19.63■□□□□ 0.73
COL18A1P39060 BX284668.5-201ENST00000422124 406 ntTSL 2 BASIC19.63■□□□□ 0.73
COL18A1P39060 LYPLA2P1-203ENST00000447689 696 ntBASIC19.63■□□□□ 0.73
COL18A1P39060 ZNF529-AS1-201ENST00000448373 1004 ntTSL 2 BASIC19.63■□□□□ 0.73
COL18A1P39060 AC093627.2-201ENST00000497017 568 ntTSL 4 BASIC19.63■□□□□ 0.73
COL18A1P39060 RPS25-202ENST00000527673 835 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL18A1P39060 AC003686.1-201ENST00000550956 1034 ntBASIC19.63■□□□□ 0.73
COL18A1P39060 AC145207.8-201ENST00000580897 563 ntTSL 4 BASIC19.63■□□□□ 0.73
COL18A1P39060 HIST1H4A-201ENST00000617569 312 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
COL18A1P39060 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
COL18A1P39060 MIR22HG-201ENST00000334146 1383 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
COL18A1P39060 NDUFB6-203ENST00000379847 1366 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL18A1P39060 SERPINB9P1-202ENST00000545177 1375 ntTSL 3 BASIC19.63■□□□□ 0.73
COL18A1P39060 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL18A1P39060 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC19.63■□□□□ 0.73
COL18A1P39060 MCC-208ENST00000514701 2855 ntTSL 2 BASIC19.63■□□□□ 0.73
COL18A1P39060 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL18A1P39060 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
COL18A1P39060 TMEM144-209ENST00000509278 1633 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
COL18A1P39060 CHCHD2-201ENST00000395422 901 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
COL18A1P39060 BX276092.5-201ENST00000439926 886 ntTSL 5 BASIC19.62■□□□□ 0.73
COL18A1P39060 ST13P19-201ENST00000442505 1124 ntBASIC19.62■□□□□ 0.73
COL18A1P39060 EMP2-203ENST00000536829 781 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
COL18A1P39060 AC068397.2-201ENST00000558742 341 ntTSL 5 BASIC19.62■□□□□ 0.73
COL18A1P39060 AC011472.1-201ENST00000588634 569 ntTSL 4 BASIC19.62■□□□□ 0.73
COL18A1P39060 AC005357.2-202ENST00000590507 1060 ntBASIC19.62■□□□□ 0.73
COL18A1P39060 AC009560.1-201ENST00000620208 434 ntBASIC19.62■□□□□ 0.73
COL18A1P39060 AC009084.3-201ENST00000623356 437 ntBASIC19.62■□□□□ 0.73
COL18A1P39060 AL132780.4-201ENST00000624870 1135 ntBASIC19.62■□□□□ 0.73
COL18A1P39060 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC19.62■□□□□ 0.73
COL18A1P39060 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC19.62■□□□□ 0.73
COL18A1P39060 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC19.62■□□□□ 0.73
COL18A1P39060 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
COL18A1P39060 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC19.62■□□□□ 0.73
COL18A1P39060 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
COL18A1P39060 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC19.62■□□□□ 0.73
COL18A1P39060 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
COL18A1P39060 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC19.62■□□□□ 0.73
COL18A1P39060 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
COL18A1P39060 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
COL18A1P39060 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC19.62■□□□□ 0.73
COL18A1P39060 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
COL18A1P39060 GSTP1-201ENST00000398603 700 ntTSL 3 BASIC19.62■□□□□ 0.73
COL18A1P39060 IZUMO1R-202ENST00000440961 805 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
COL18A1P39060 AC018463.1-201ENST00000456674 917 ntBASIC19.62■□□□□ 0.73
COL18A1P39060 AC114947.1-202ENST00000514136 344 ntBASIC19.62■□□□□ 0.73
COL18A1P39060 SMIM6-201ENST00000556126 866 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
COL18A1P39060 IRF3-225ENST00000600022 882 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
COL18A1P39060 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
COL18A1P39060 AHCYP4-201ENST00000419201 1315 ntBASIC19.62■□□□□ 0.73
COL18A1P39060 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
COL18A1P39060 RASSF6-202ENST00000335049 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
COL18A1P39060 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
COL18A1P39060 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC19.61■□□□□ 0.73
COL18A1P39060 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
COL18A1P39060 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC19.61■□□□□ 0.73
COL18A1P39060 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC19.61■□□□□ 0.73
COL18A1P39060 AC211486.1-201ENST00000275590 980 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
COL18A1P39060 CGB1-201ENST00000301407 573 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
COL18A1P39060 HIST2H2BA-201ENST00000412169 381 ntBASIC19.61■□□□□ 0.73
COL18A1P39060 LINC01433-201ENST00000419003 697 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
COL18A1P39060 AL008733.1-201ENST00000440516 469 ntTSL 3 BASIC19.61■□□□□ 0.73
COL18A1P39060 PGAP2-212ENST00000464906 1259 ntTSL 2 BASIC19.61■□□□□ 0.73
COL18A1P39060 AC011500.3-201ENST00000594676 647 ntTSL 4 BASIC19.61■□□□□ 0.73
COL18A1P39060 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
COL18A1P39060 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC19.61■□□□□ 0.73
COL18A1P39060 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
COL18A1P39060 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
COL18A1P39060 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
COL18A1P39060 ZNF619-201ENST00000314686 2233 ntTSL 2 BASIC19.61■□□□□ 0.73
COL18A1P39060 WARS-232ENST00000556645 2508 ntTSL 5 BASIC19.6■□□□□ 0.73
COL18A1P39060 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC19.6■□□□□ 0.73
COL18A1P39060 AC114488.1-201ENST00000435872 591 ntTSL 3 BASIC19.6■□□□□ 0.73
COL18A1P39060 MIR5196-201ENST00000578146 115 ntBASIC19.6■□□□□ 0.73
COL18A1P39060 ZNF350-AS1-202ENST00000600253 577 ntTSL 4 BASIC19.6■□□□□ 0.73
COL18A1P39060 VAMP2-202ENST00000404970 1479 ntTSL 2 BASIC19.6■□□□□ 0.73
COL18A1P39060 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC19.6■□□□□ 0.73
COL18A1P39060 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 52.1 ms