Protein–RNA interactions for Protein: O60232

SSSCA1, Sjoegren syndrome/scleroderma autoantigen 1, humanhuman

Predictions only

Length 199 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSSCA1O60232 VAPA-202ENST00000400000 6815 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
SSSCA1O60232 TMEM47-201ENST00000275954 4054 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
SSSCA1O60232 PNPLA3-201ENST00000216180 2805 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
SSSCA1O60232 CPSF1-212ENST00000616140 4494 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
SSSCA1O60232 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
SSSCA1O60232 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
SSSCA1O60232 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
SSSCA1O60232 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC12.59□□□□□ -0.39
SSSCA1O60232 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC12.59□□□□□ -0.39
SSSCA1O60232 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC12.59□□□□□ -0.39
SSSCA1O60232 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
SSSCA1O60232 RPS6KC1-208ENST00000614059 4188 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
SSSCA1O60232 FES-203ENST00000394302 2133 ntTSL 5 BASIC12.59□□□□□ -0.39
SSSCA1O60232 DRC3-203ENST00000399187 2008 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
SSSCA1O60232 SCUBE2-201ENST00000309263 3727 ntTSL 5 BASIC12.59□□□□□ -0.39
SSSCA1O60232 CUL1-201ENST00000325222 3064 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
SSSCA1O60232 PPIL2-202ENST00000398831 2574 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
SSSCA1O60232 ARHGAP45-202ENST00000539243 4184 ntAPPRIS ALT2 TSL 2 BASIC12.59□□□□□ -0.39
SSSCA1O60232 ITGB4-202ENST00000449880 5689 ntAPPRIS P3 TSL 1 (best) BASIC12.59□□□□□ -0.39
SSSCA1O60232 WIZ-203ENST00000545156 4466 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
SSSCA1O60232 PRR12-203ENST00000615927 4479 ntAPPRIS ALT2 TSL 5 BASIC12.59□□□□□ -0.39
SSSCA1O60232 SOX21-AS1-201ENST00000438290 3287 ntTSL 2 BASIC12.59□□□□□ -0.39
SSSCA1O60232 FEM1A-201ENST00000269856 9593 ntAPPRIS P1 BASIC12.59□□□□□ -0.39
SSSCA1O60232 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
SSSCA1O60232 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
SSSCA1O60232 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC12.59□□□□□ -0.39
SSSCA1O60232 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
SSSCA1O60232 RHOQP3-201ENST00000437982 621 ntBASIC12.59□□□□□ -0.39
SSSCA1O60232 HCG4B-203ENST00000450128 991 ntBASIC12.59□□□□□ -0.39
SSSCA1O60232 SKP2-204ENST00000508514 821 ntTSL 3 BASIC12.59□□□□□ -0.39
SSSCA1O60232 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC12.59□□□□□ -0.39
SSSCA1O60232 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC12.59□□□□□ -0.39
SSSCA1O60232 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC12.59□□□□□ -0.39
SSSCA1O60232 AL138918.1-201ENST00000568306 659 ntBASIC12.59□□□□□ -0.39
SSSCA1O60232 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
SSSCA1O60232 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC12.59□□□□□ -0.39
SSSCA1O60232 AC073389.1-201ENST00000595595 795 ntBASIC12.59□□□□□ -0.39
SSSCA1O60232 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
SSSCA1O60232 AC097359.3-201ENST00000603982 1210 ntBASIC12.59□□□□□ -0.39
SSSCA1O60232 AC090099.1-203ENST00000527059 2945 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
SSSCA1O60232 MEFV-201ENST00000219596 3499 ntAPPRIS P2 TSL 1 (best) BASIC12.59□□□□□ -0.39
SSSCA1O60232 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC12.59□□□□□ -0.39
SSSCA1O60232 NUP54-217ENST00000514987 1563 ntTSL 2 BASIC12.59□□□□□ -0.39
SSSCA1O60232 AL607033.1-201ENST00000623900 1599 ntBASIC12.59□□□□□ -0.39
SSSCA1O60232 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
SSSCA1O60232 UMODL1-204ENST00000400427 5442 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
SSSCA1O60232 C17orf53-201ENST00000245382 2272 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
SSSCA1O60232 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC12.59□□□□□ -0.39
SSSCA1O60232 CEP131-202ENST00000374782 3505 ntAPPRIS P3 TSL 5 BASIC12.59□□□□□ -0.39
SSSCA1O60232 PTBP1-221ENST00000635647 3691 ntTSL 5 BASIC12.59□□□□□ -0.39
SSSCA1O60232 SDC1-201ENST00000254351 3147 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
SSSCA1O60232 NMNAT3-202ENST00000339837 1863 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
SSSCA1O60232 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
SSSCA1O60232 GCLC-201ENST00000229416 3813 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
SSSCA1O60232 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
SSSCA1O60232 DPYSL2-204ENST00000521913 4805 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
SSSCA1O60232 TFR2-201ENST00000223051 2888 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
SSSCA1O60232 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC12.59□□□□□ -0.39
SSSCA1O60232 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC12.59□□□□□ -0.39
SSSCA1O60232 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
SSSCA1O60232 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC12.59□□□□□ -0.39
SSSCA1O60232 AC005899.8-201ENST00000625127 3153 ntTSL 5 BASIC12.59□□□□□ -0.39
SSSCA1O60232 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
SSSCA1O60232 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC12.58□□□□□ -0.39
SSSCA1O60232 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC12.58□□□□□ -0.39
SSSCA1O60232 TMPRSS2-202ENST00000398585 3240 ntTSL 2 BASIC12.58□□□□□ -0.39
SSSCA1O60232 NPRL3-212ENST00000620134 3203 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.39
SSSCA1O60232 NUCB1-201ENST00000405315 2668 ntAPPRIS P2 TSL 1 (best) BASIC12.58□□□□□ -0.4
SSSCA1O60232 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
SSSCA1O60232 FOXD4L5-201ENST00000377420 3109 ntAPPRIS P1 BASIC12.58□□□□□ -0.4
SSSCA1O60232 MBD1-201ENST00000269468 3259 ntAPPRIS P3 TSL 5 BASIC12.58□□□□□ -0.4
SSSCA1O60232 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC12.58□□□□□ -0.4
SSSCA1O60232 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC12.58□□□□□ -0.4
SSSCA1O60232 AC092135.3-201ENST00000624151 1846 ntBASIC12.58□□□□□ -0.4
SSSCA1O60232 MINDY4-201ENST00000265299 2733 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
SSSCA1O60232 GAS2L2-202ENST00000604641 3014 ntAPPRIS P2 TSL 1 (best) BASIC12.58□□□□□ -0.4
SSSCA1O60232 GMPPB-203ENST00000480687 6108 ntAPPRIS P1 TSL 2 BASIC12.58□□□□□ -0.4
SSSCA1O60232 NTN4-201ENST00000343702 3615 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
SSSCA1O60232 TBC1D22A-201ENST00000337137 3787 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
SSSCA1O60232 CELF1-201ENST00000310513 4583 ntAPPRIS ALT1 TSL 1 (best) BASIC12.58□□□□□ -0.4
SSSCA1O60232 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
SSSCA1O60232 SREBF1-202ENST00000355815 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
SSSCA1O60232 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
SSSCA1O60232 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
SSSCA1O60232 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
SSSCA1O60232 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC12.58□□□□□ -0.4
SSSCA1O60232 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC12.58□□□□□ -0.4
SSSCA1O60232 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC12.58□□□□□ -0.4
SSSCA1O60232 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC12.58□□□□□ -0.4
SSSCA1O60232 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC12.58□□□□□ -0.4
SSSCA1O60232 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC12.58□□□□□ -0.4
SSSCA1O60232 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC12.58□□□□□ -0.4
SSSCA1O60232 UNC93B6-202ENST00000528242 690 ntBASIC12.58□□□□□ -0.4
SSSCA1O60232 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
SSSCA1O60232 COQ9-214ENST00000567933 882 ntTSL 3 BASIC12.58□□□□□ -0.4
SSSCA1O60232 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
SSSCA1O60232 IFNL4P1-201ENST00000607083 540 ntBASIC12.58□□□□□ -0.4
SSSCA1O60232 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
SSSCA1O60232 PHTF1-204ENST00000369604 3273 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
SSSCA1O60232 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC12.58□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 47.1 ms