Protein–RNA interactions for Protein: Q9NTJ3

SMC4, Structural maintenance of chromosomes protein 4, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4Q9NTJ3 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
SMC4Q9NTJ3 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
SMC4Q9NTJ3 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC19.71■□□□□ 0.75
SMC4Q9NTJ3 CRB3P1-201ENST00000449338 276 ntBASIC19.71■□□□□ 0.75
SMC4Q9NTJ3 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC19.71■□□□□ 0.75
SMC4Q9NTJ3 HNRNPA1P13-201ENST00000510646 963 ntBASIC19.71■□□□□ 0.75
SMC4Q9NTJ3 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC19.71■□□□□ 0.75
SMC4Q9NTJ3 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC19.71■□□□□ 0.75
SMC4Q9NTJ3 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC19.71■□□□□ 0.75
SMC4Q9NTJ3 SERF2-217ENST00000630046 862 ntTSL 5 BASIC19.71■□□□□ 0.75
SMC4Q9NTJ3 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC19.71■□□□□ 0.75
SMC4Q9NTJ3 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
SMC4Q9NTJ3 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC19.71■□□□□ 0.75
SMC4Q9NTJ3 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SMC4Q9NTJ3 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
SMC4Q9NTJ3 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC19.71■□□□□ 0.75
SMC4Q9NTJ3 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC19.71■□□□□ 0.75
SMC4Q9NTJ3 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC19.71■□□□□ 0.75
SMC4Q9NTJ3 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SMC4Q9NTJ3 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC19.71■□□□□ 0.75
SMC4Q9NTJ3 AC093525.8-201ENST00000624099 1342 ntBASIC19.71■□□□□ 0.75
SMC4Q9NTJ3 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC19.71■□□□□ 0.75
SMC4Q9NTJ3 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC19.71■□□□□ 0.75
SMC4Q9NTJ3 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SMC4Q9NTJ3 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC19.7■□□□□ 0.74
SMC4Q9NTJ3 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
SMC4Q9NTJ3 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SMC4Q9NTJ3 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SMC4Q9NTJ3 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC19.7■□□□□ 0.74
SMC4Q9NTJ3 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC19.7■□□□□ 0.74
SMC4Q9NTJ3 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SMC4Q9NTJ3 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SMC4Q9NTJ3 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC19.7■□□□□ 0.74
SMC4Q9NTJ3 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SMC4Q9NTJ3 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC19.7■□□□□ 0.74
SMC4Q9NTJ3 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
SMC4Q9NTJ3 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SMC4Q9NTJ3 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC19.7■□□□□ 0.74
SMC4Q9NTJ3 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SMC4Q9NTJ3 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC19.7■□□□□ 0.74
SMC4Q9NTJ3 GLI4-203ENST00000517468 963 ntTSL 5 BASIC19.7■□□□□ 0.74
SMC4Q9NTJ3 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC19.7■□□□□ 0.74
SMC4Q9NTJ3 TP53TG3HP-202ENST00000569755 579 ntBASIC19.7■□□□□ 0.74
SMC4Q9NTJ3 AC138761.1-201ENST00000584393 385 ntBASIC19.7■□□□□ 0.74
SMC4Q9NTJ3 AC093813.1-201ENST00000605066 256 ntBASIC19.7■□□□□ 0.74
SMC4Q9NTJ3 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SMC4Q9NTJ3 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC19.7■□□□□ 0.74
SMC4Q9NTJ3 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
SMC4Q9NTJ3 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
SMC4Q9NTJ3 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
SMC4Q9NTJ3 FLJ16779-201ENST00000612722 7638 ntBASIC19.7■□□□□ 0.74
SMC4Q9NTJ3 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SMC4Q9NTJ3 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
SMC4Q9NTJ3 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SMC4Q9NTJ3 ACE3P-201ENST00000423435 1973 ntBASIC19.7■□□□□ 0.74
SMC4Q9NTJ3 AL157414.3-201ENST00000624276 1954 ntBASIC19.7■□□□□ 0.74
SMC4Q9NTJ3 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SMC4Q9NTJ3 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SMC4Q9NTJ3 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC19.69■□□□□ 0.74
SMC4Q9NTJ3 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
SMC4Q9NTJ3 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
SMC4Q9NTJ3 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
SMC4Q9NTJ3 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
SMC4Q9NTJ3 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SMC4Q9NTJ3 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SMC4Q9NTJ3 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
SMC4Q9NTJ3 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SMC4Q9NTJ3 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
SMC4Q9NTJ3 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC19.69■□□□□ 0.74
SMC4Q9NTJ3 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SMC4Q9NTJ3 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SMC4Q9NTJ3 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SMC4Q9NTJ3 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC19.69■□□□□ 0.74
SMC4Q9NTJ3 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC19.69■□□□□ 0.74
SMC4Q9NTJ3 SPDYE22P-201ENST00000582158 798 ntBASIC19.69■□□□□ 0.74
SMC4Q9NTJ3 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
SMC4Q9NTJ3 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SMC4Q9NTJ3 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SMC4Q9NTJ3 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
SMC4Q9NTJ3 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
SMC4Q9NTJ3 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
SMC4Q9NTJ3 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
SMC4Q9NTJ3 MARS-233ENST00000628866 2583 ntTSL 5 BASIC19.69■□□□□ 0.74
SMC4Q9NTJ3 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
SMC4Q9NTJ3 AC063926.3-201ENST00000624734 5658 ntBASIC19.69■□□□□ 0.74
SMC4Q9NTJ3 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SMC4Q9NTJ3 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
SMC4Q9NTJ3 KRT8P22-201ENST00000562317 1415 ntBASIC19.68■□□□□ 0.74
SMC4Q9NTJ3 FURIN-207ENST00000618099 4345 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
SMC4Q9NTJ3 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SMC4Q9NTJ3 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SMC4Q9NTJ3 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SMC4Q9NTJ3 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SMC4Q9NTJ3 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SMC4Q9NTJ3 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
SMC4Q9NTJ3 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
SMC4Q9NTJ3 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SMC4Q9NTJ3 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SMC4Q9NTJ3 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SMC4Q9NTJ3 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 45.7 ms