Protein–RNA interactions for Protein: Q9NSU2

TREX1, Three-prime repair exonuclease 1, humanhuman

Predictions only

Length 369 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TREX1Q9NSU2 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
TREX1Q9NSU2 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
TREX1Q9NSU2 OSM-203ENST00000403463 464 ntTSL 3 BASIC15.29■□□□□ 0.04
TREX1Q9NSU2 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC15.29■□□□□ 0.04
TREX1Q9NSU2 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC15.29■□□□□ 0.04
TREX1Q9NSU2 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
TREX1Q9NSU2 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC15.29■□□□□ 0.04
TREX1Q9NSU2 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC15.29■□□□□ 0.04
TREX1Q9NSU2 AC027796.2-201ENST00000575326 344 ntBASIC15.29■□□□□ 0.04
TREX1Q9NSU2 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
TREX1Q9NSU2 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
TREX1Q9NSU2 AC009118.2-201ENST00000613275 655 ntBASIC15.29■□□□□ 0.04
TREX1Q9NSU2 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
TREX1Q9NSU2 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC15.29■□□□□ 0.04
TREX1Q9NSU2 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
TREX1Q9NSU2 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC15.29■□□□□ 0.04
TREX1Q9NSU2 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
TREX1Q9NSU2 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
TREX1Q9NSU2 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
TREX1Q9NSU2 AC018529.2-202ENST00000611482 3087 ntBASIC15.29■□□□□ 0.04
TREX1Q9NSU2 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC15.29■□□□□ 0.04
TREX1Q9NSU2 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
TREX1Q9NSU2 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC15.29■□□□□ 0.04
TREX1Q9NSU2 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
TREX1Q9NSU2 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
TREX1Q9NSU2 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
TREX1Q9NSU2 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
TREX1Q9NSU2 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
TREX1Q9NSU2 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
TREX1Q9NSU2 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
TREX1Q9NSU2 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
TREX1Q9NSU2 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
TREX1Q9NSU2 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC15.28■□□□□ 0.04
TREX1Q9NSU2 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC15.28■□□□□ 0.04
TREX1Q9NSU2 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC15.28■□□□□ 0.04
TREX1Q9NSU2 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
TREX1Q9NSU2 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC15.28■□□□□ 0.04
TREX1Q9NSU2 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC15.28■□□□□ 0.04
TREX1Q9NSU2 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
TREX1Q9NSU2 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
TREX1Q9NSU2 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC15.28■□□□□ 0.04
TREX1Q9NSU2 TDG-209ENST00000544861 1387 ntTSL 2 BASIC15.28■□□□□ 0.04
TREX1Q9NSU2 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
TREX1Q9NSU2 INTS4P2-202ENST00000614726 2019 ntBASIC15.28■□□□□ 0.04
TREX1Q9NSU2 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
TREX1Q9NSU2 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC15.28■□□□□ 0.04
TREX1Q9NSU2 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
TREX1Q9NSU2 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
TREX1Q9NSU2 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
TREX1Q9NSU2 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC15.28■□□□□ 0.04
TREX1Q9NSU2 TEX30-203ENST00000376022 828 ntTSL 2 BASIC15.28■□□□□ 0.04
TREX1Q9NSU2 METTL26-204ENST00000397665 558 ntTSL 2 BASIC15.28■□□□□ 0.04
TREX1Q9NSU2 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC15.28■□□□□ 0.04
TREX1Q9NSU2 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC15.28■□□□□ 0.04
TREX1Q9NSU2 HNRNPA1P40-201ENST00000426371 1278 ntBASIC15.28■□□□□ 0.04
TREX1Q9NSU2 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC15.28■□□□□ 0.04
TREX1Q9NSU2 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC15.28■□□□□ 0.04
TREX1Q9NSU2 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
TREX1Q9NSU2 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
TREX1Q9NSU2 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
TREX1Q9NSU2 SERBP1P5-201ENST00000510079 1181 ntBASIC15.28■□□□□ 0.04
TREX1Q9NSU2 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC15.28■□□□□ 0.04
TREX1Q9NSU2 INO80C-206ENST00000586489 594 ntTSL 3 BASIC15.28■□□□□ 0.04
TREX1Q9NSU2 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC15.28■□□□□ 0.04
TREX1Q9NSU2 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
TREX1Q9NSU2 AJ011932.1-201ENST00000621707 465 ntBASIC15.28■□□□□ 0.04
TREX1Q9NSU2 HFE2-206ENST00000634927 506 ntTSL 4 BASIC15.28■□□□□ 0.04
TREX1Q9NSU2 PRSS30P-206ENST00000641773 873 ntBASIC15.28■□□□□ 0.04
TREX1Q9NSU2 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
TREX1Q9NSU2 AC023908.3-201ENST00000564211 3047 ntBASIC15.28■□□□□ 0.04
TREX1Q9NSU2 AC140479.7-201ENST00000636301 2332 ntBASIC15.28■□□□□ 0.04
TREX1Q9NSU2 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
TREX1Q9NSU2 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
TREX1Q9NSU2 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
TREX1Q9NSU2 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
TREX1Q9NSU2 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
TREX1Q9NSU2 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
TREX1Q9NSU2 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
TREX1Q9NSU2 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
TREX1Q9NSU2 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC15.28■□□□□ 0.04
TREX1Q9NSU2 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC15.28■□□□□ 0.04
TREX1Q9NSU2 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
TREX1Q9NSU2 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC15.28■□□□□ 0.04
TREX1Q9NSU2 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC15.27■□□□□ 0.04
TREX1Q9NSU2 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.04
TREX1Q9NSU2 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC15.27■□□□□ 0.04
TREX1Q9NSU2 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
TREX1Q9NSU2 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
TREX1Q9NSU2 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
TREX1Q9NSU2 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC15.27■□□□□ 0.04
TREX1Q9NSU2 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC15.27■□□□□ 0.04
TREX1Q9NSU2 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
TREX1Q9NSU2 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC15.27■□□□□ 0.04
TREX1Q9NSU2 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
TREX1Q9NSU2 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
TREX1Q9NSU2 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
TREX1Q9NSU2 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
TREX1Q9NSU2 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
TREX1Q9NSU2 MIR770-201ENST00000390219 98 ntBASIC15.27■□□□□ 0.04
TREX1Q9NSU2 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC15.27■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms