Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
COL12A1Q99715 FGD4-203ENST00000472289 1629 ntTSL 2 BASIC13.11□□□□□ -0.31
COL12A1Q99715 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC13.11□□□□□ -0.31
COL12A1Q99715 AL603764.1-201ENST00000636452 321 ntBASIC13.11□□□□□ -0.31
COL12A1Q99715 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC13.11□□□□□ -0.31
COL12A1Q99715 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
COL12A1Q99715 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC13.11□□□□□ -0.31
COL12A1Q99715 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
COL12A1Q99715 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
COL12A1Q99715 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
COL12A1Q99715 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
COL12A1Q99715 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC13.11□□□□□ -0.31
COL12A1Q99715 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
COL12A1Q99715 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
COL12A1Q99715 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
COL12A1Q99715 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC13.11□□□□□ -0.31
COL12A1Q99715 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC13.11□□□□□ -0.31
COL12A1Q99715 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC13.11□□□□□ -0.31
COL12A1Q99715 PLAC9-203ENST00000372270 534 ntAPPRIS ALT2 TSL 2 BASIC13.11□□□□□ -0.31
COL12A1Q99715 IGLC1-201ENST00000390321 460 ntAPPRIS P1 BASIC13.11□□□□□ -0.31
COL12A1Q99715 ZNF286A-201ENST00000395893 654 ntTSL 3 BASIC13.11□□□□□ -0.31
COL12A1Q99715 PPP1R7-205ENST00000404405 1009 ntTSL 3 BASIC13.11□□□□□ -0.31
COL12A1Q99715 LRRC75A-AS1-209ENST00000481027 1016 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
COL12A1Q99715 BANF1-205ENST00000527348 670 ntAPPRIS P1 TSL 3 BASIC13.11□□□□□ -0.31
COL12A1Q99715 AC007298.2-201ENST00000551849 862 ntTSL 3 BASIC13.11□□□□□ -0.31
COL12A1Q99715 LRRC75A-AS1-226ENST00000582911 879 ntTSL 5 BASIC13.11□□□□□ -0.31
COL12A1Q99715 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
COL12A1Q99715 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
COL12A1Q99715 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC13.11□□□□□ -0.31
COL12A1Q99715 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC13.1□□□□□ -0.31
COL12A1Q99715 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC13.1□□□□□ -0.31
COL12A1Q99715 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC13.1□□□□□ -0.31
COL12A1Q99715 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
COL12A1Q99715 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
COL12A1Q99715 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC13.1□□□□□ -0.31
COL12A1Q99715 UROD-201ENST00000246337 1300 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
COL12A1Q99715 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
COL12A1Q99715 NCR3-202ENST00000376071 541 ntTSL 5 BASIC13.1□□□□□ -0.31
COL12A1Q99715 AL391119.1-201ENST00000416563 271 ntTSL 5 BASIC13.1□□□□□ -0.31
COL12A1Q99715 TIMMDC1-207ENST00000493694 710 ntTSL 2 BASIC13.1□□□□□ -0.31
COL12A1Q99715 PGAM1P12-201ENST00000505622 748 ntBASIC13.1□□□□□ -0.31
COL12A1Q99715 ACTN1-AS1-202ENST00000553961 599 ntTSL 4 BASIC13.1□□□□□ -0.31
COL12A1Q99715 AP005264.3-201ENST00000592370 485 ntTSL 5 BASIC13.1□□□□□ -0.31
COL12A1Q99715 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
COL12A1Q99715 C3orf33-205ENST00000534941 1804 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
COL12A1Q99715 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
COL12A1Q99715 AMT-224ENST00000635808 1610 ntTSL 5 BASIC13.1□□□□□ -0.31
COL12A1Q99715 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
COL12A1Q99715 KCTD18-202ENST00000409157 2556 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
COL12A1Q99715 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC13.1□□□□□ -0.31
COL12A1Q99715 CCDC51-206ENST00000447018 1461 ntTSL 2 BASIC13.1□□□□□ -0.31
COL12A1Q99715 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
COL12A1Q99715 FLII-221ENST00000578558 2377 ntTSL 5 BASIC13.1□□□□□ -0.31
COL12A1Q99715 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
COL12A1Q99715 SLC6A9-207ENST00000475075 1881 ntTSL 2 BASIC13.1□□□□□ -0.31
COL12A1Q99715 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
COL12A1Q99715 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
COL12A1Q99715 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC13.1□□□□□ -0.31
COL12A1Q99715 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
COL12A1Q99715 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
COL12A1Q99715 BX248123.1-201ENST00000429070 606 ntTSL 3 BASIC13.1□□□□□ -0.31
COL12A1Q99715 HLA-DQB2-232ENST00000437316 1214 ntAPPRIS P1 BASIC13.1□□□□□ -0.31
COL12A1Q99715 AC019205.2-201ENST00000442007 1083 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
COL12A1Q99715 CALCA-205ENST00000486207 851 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
COL12A1Q99715 APOPT1-215ENST00000556253 783 ntTSL 3 BASIC13.1□□□□□ -0.31
COL12A1Q99715 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC13.1□□□□□ -0.31
COL12A1Q99715 AC011451.3-201ENST00000634951 582 ntTSL 3 BASIC13.1□□□□□ -0.31
COL12A1Q99715 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC13.1□□□□□ -0.31
COL12A1Q99715 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
COL12A1Q99715 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
COL12A1Q99715 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC13.1□□□□□ -0.31
COL12A1Q99715 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC13.1□□□□□ -0.31
COL12A1Q99715 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
COL12A1Q99715 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
COL12A1Q99715 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
COL12A1Q99715 OR2K2-201ENST00000302681 1078 ntAPPRIS P1 BASIC13.09□□□□□ -0.31
COL12A1Q99715 KRTAP1-3-201ENST00000344363 972 ntAPPRIS P1 BASIC13.09□□□□□ -0.31
COL12A1Q99715 HLA-DRB5-201ENST00000374975 1260 ntAPPRIS P1 BASIC13.09□□□□□ -0.31
COL12A1Q99715 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC13.09□□□□□ -0.31
COL12A1Q99715 AC022616.1-201ENST00000518688 554 ntBASIC13.09□□□□□ -0.31
COL12A1Q99715 RTN4RL2-203ENST00000533205 637 ntTSL 3 BASIC13.09□□□□□ -0.31
COL12A1Q99715 TCL1A-205ENST00000555202 717 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
COL12A1Q99715 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC13.09□□□□□ -0.31
COL12A1Q99715 TREX1-206ENST00000629913 945 ntAPPRIS P1 BASIC13.09□□□□□ -0.31
COL12A1Q99715 DBET-201ENST00000630918 3363 ntBASIC13.09□□□□□ -0.31
COL12A1Q99715 KCTD6-202ENST00000404589 1533 ntAPPRIS P1 TSL 2 BASIC13.09□□□□□ -0.31
COL12A1Q99715 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
COL12A1Q99715 AKR1B1-201ENST00000285930 1409 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
COL12A1Q99715 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
COL12A1Q99715 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC13.09□□□□□ -0.31
COL12A1Q99715 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC13.09□□□□□ -0.31
COL12A1Q99715 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC13.09□□□□□ -0.31
COL12A1Q99715 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC13.09□□□□□ -0.31
COL12A1Q99715 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC13.09□□□□□ -0.31
COL12A1Q99715 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
COL12A1Q99715 LAMP5-202ENST00000427562 1309 ntTSL 2 BASIC13.09□□□□□ -0.31
COL12A1Q99715 AL008718.2-201ENST00000609206 1313 ntBASIC13.09□□□□□ -0.31
COL12A1Q99715 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC13.09□□□□□ -0.31
COL12A1Q99715 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
COL12A1Q99715 JAZF1-AS1-201ENST00000436758 548 ntTSL 2 BASIC13.09□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 52.7 ms