Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 TSC22D1-211ENST00000501704 4026 ntTSL 2 BASIC14.82□□□□□ -0.04
VMP1Q96GC9 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC14.82□□□□□ -0.04
VMP1Q96GC9 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
VMP1Q96GC9 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
VMP1Q96GC9 SPOCK3-201ENST00000357154 2986 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
VMP1Q96GC9 AKAP7-204ENST00000431975 2954 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
VMP1Q96GC9 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
VMP1Q96GC9 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
VMP1Q96GC9 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
VMP1Q96GC9 TAF6-205ENST00000437822 2318 ntTSL 2 BASIC14.82□□□□□ -0.04
VMP1Q96GC9 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
VMP1Q96GC9 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
VMP1Q96GC9 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
VMP1Q96GC9 KCTD15-201ENST00000284006 4918 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
VMP1Q96GC9 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
VMP1Q96GC9 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC14.82□□□□□ -0.04
VMP1Q96GC9 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
VMP1Q96GC9 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC14.82□□□□□ -0.04
VMP1Q96GC9 KLK8-202ENST00000320838 456 ntTSL 5 BASIC14.82□□□□□ -0.04
VMP1Q96GC9 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC14.82□□□□□ -0.04
VMP1Q96GC9 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC14.82□□□□□ -0.04
VMP1Q96GC9 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
VMP1Q96GC9 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
VMP1Q96GC9 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC14.82□□□□□ -0.04
VMP1Q96GC9 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
VMP1Q96GC9 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC14.82□□□□□ -0.04
VMP1Q96GC9 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC14.82□□□□□ -0.04
VMP1Q96GC9 AC025048.3-201ENST00000590609 569 ntBASIC14.82□□□□□ -0.04
VMP1Q96GC9 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC14.82□□□□□ -0.04
VMP1Q96GC9 YTHDF3-AS1-201ENST00000603538 718 ntBASIC14.82□□□□□ -0.04
VMP1Q96GC9 AC074044.1-201ENST00000609673 707 ntBASIC14.82□□□□□ -0.04
VMP1Q96GC9 5S_rRNA.22-201ENST00000614916 106 ntBASIC14.82□□□□□ -0.04
VMP1Q96GC9 AC005702.4-201ENST00000618393 416 ntBASIC14.82□□□□□ -0.04
VMP1Q96GC9 AC004840.1-201ENST00000636359 365 ntBASIC14.82□□□□□ -0.04
VMP1Q96GC9 AL109936.8-201ENST00000641772 604 ntBASIC14.82□□□□□ -0.04
VMP1Q96GC9 ABR-205ENST00000544583 5595 ntTSL 2 BASIC14.82□□□□□ -0.04
VMP1Q96GC9 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
VMP1Q96GC9 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
VMP1Q96GC9 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC14.82□□□□□ -0.04
VMP1Q96GC9 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
VMP1Q96GC9 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
VMP1Q96GC9 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
VMP1Q96GC9 TAF5-201ENST00000369839 3268 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
VMP1Q96GC9 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
VMP1Q96GC9 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC14.82□□□□□ -0.04
VMP1Q96GC9 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC14.82□□□□□ -0.04
VMP1Q96GC9 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
VMP1Q96GC9 OR2I1P-209ENST00000641730 5365 ntBASIC14.82□□□□□ -0.04
VMP1Q96GC9 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
VMP1Q96GC9 REXO1L1P-202ENST00000608646 1974 ntBASIC14.82□□□□□ -0.04
VMP1Q96GC9 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC14.82□□□□□ -0.04
VMP1Q96GC9 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
VMP1Q96GC9 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
VMP1Q96GC9 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
VMP1Q96GC9 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
VMP1Q96GC9 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC14.81□□□□□ -0.04
VMP1Q96GC9 LINC00841-201ENST00000451929 2126 ntTSL 2 BASIC14.81□□□□□ -0.04
VMP1Q96GC9 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
VMP1Q96GC9 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
VMP1Q96GC9 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
VMP1Q96GC9 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC14.81□□□□□ -0.04
VMP1Q96GC9 PHF24-201ENST00000242315 5718 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
VMP1Q96GC9 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC14.81□□□□□ -0.04
VMP1Q96GC9 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
VMP1Q96GC9 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
VMP1Q96GC9 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
VMP1Q96GC9 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
VMP1Q96GC9 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC14.81□□□□□ -0.04
VMP1Q96GC9 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC14.81□□□□□ -0.04
VMP1Q96GC9 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
VMP1Q96GC9 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC14.81□□□□□ -0.04
VMP1Q96GC9 AC114501.2-201ENST00000439631 535 ntBASIC14.81□□□□□ -0.04
VMP1Q96GC9 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
VMP1Q96GC9 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC14.81□□□□□ -0.04
VMP1Q96GC9 PHKG1P2-201ENST00000457537 863 ntBASIC14.81□□□□□ -0.04
VMP1Q96GC9 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC14.81□□□□□ -0.04
VMP1Q96GC9 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC14.81□□□□□ -0.04
VMP1Q96GC9 SERBP1P5-201ENST00000510079 1181 ntBASIC14.81□□□□□ -0.04
VMP1Q96GC9 RAB35-202ENST00000534951 939 ntTSL 2 BASIC14.81□□□□□ -0.04
VMP1Q96GC9 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC14.81□□□□□ -0.04
VMP1Q96GC9 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC14.81□□□□□ -0.04
VMP1Q96GC9 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
VMP1Q96GC9 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
VMP1Q96GC9 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
VMP1Q96GC9 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
VMP1Q96GC9 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
VMP1Q96GC9 AL450472.2-201ENST00000603663 1156 ntBASIC14.81□□□□□ -0.04
VMP1Q96GC9 TEX48-202ENST00000612244 662 ntTSL 3 BASIC14.81□□□□□ -0.04
VMP1Q96GC9 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
VMP1Q96GC9 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC14.81□□□□□ -0.04
VMP1Q96GC9 AC011477.6-201ENST00000604980 1927 ntBASIC14.81□□□□□ -0.04
VMP1Q96GC9 SOX7-201ENST00000304501 3216 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
VMP1Q96GC9 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC14.81□□□□□ -0.04
VMP1Q96GC9 SPATS2L-209ENST00000409988 2698 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
VMP1Q96GC9 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
VMP1Q96GC9 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
VMP1Q96GC9 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC14.81□□□□□ -0.04
VMP1Q96GC9 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC14.81□□□□□ -0.04
VMP1Q96GC9 SETD1B-203ENST00000604567 5969 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
VMP1Q96GC9 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC14.81□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 53.1 ms