Protein–RNA interactions for Protein: Q96A23

CPNE4, Copine-4, humanhuman

Predicted RBP Predictions only

Length 557 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4Q96A23 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CPNE4Q96A23 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
CPNE4Q96A23 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
CPNE4Q96A23 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CPNE4Q96A23 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
CPNE4Q96A23 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC13.84□□□□□ -0.19
CPNE4Q96A23 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
CPNE4Q96A23 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
CPNE4Q96A23 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC13.84□□□□□ -0.19
CPNE4Q96A23 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CPNE4Q96A23 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC13.84□□□□□ -0.19
CPNE4Q96A23 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CPNE4Q96A23 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC13.84□□□□□ -0.19
CPNE4Q96A23 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC13.84□□□□□ -0.19
CPNE4Q96A23 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CPNE4Q96A23 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC13.84□□□□□ -0.19
CPNE4Q96A23 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC13.84□□□□□ -0.19
CPNE4Q96A23 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CPNE4Q96A23 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
CPNE4Q96A23 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
CPNE4Q96A23 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC13.84□□□□□ -0.19
CPNE4Q96A23 TEX30-203ENST00000376022 828 ntTSL 2 BASIC13.84□□□□□ -0.19
CPNE4Q96A23 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC13.84□□□□□ -0.19
CPNE4Q96A23 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC13.84□□□□□ -0.19
CPNE4Q96A23 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC13.84□□□□□ -0.19
CPNE4Q96A23 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
CPNE4Q96A23 PNKD-204ENST00000436005 978 ntTSL 5 BASIC13.84□□□□□ -0.19
CPNE4Q96A23 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC13.84□□□□□ -0.19
CPNE4Q96A23 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC13.84□□□□□ -0.19
CPNE4Q96A23 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC13.84□□□□□ -0.19
CPNE4Q96A23 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC13.84□□□□□ -0.19
CPNE4Q96A23 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
CPNE4Q96A23 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC13.84□□□□□ -0.19
CPNE4Q96A23 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC13.84□□□□□ -0.19
CPNE4Q96A23 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC13.84□□□□□ -0.19
CPNE4Q96A23 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC13.84□□□□□ -0.19
CPNE4Q96A23 PAM16-204ENST00000571941 674 ntTSL 3 BASIC13.84□□□□□ -0.19
CPNE4Q96A23 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC13.84□□□□□ -0.19
CPNE4Q96A23 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC13.84□□□□□ -0.19
CPNE4Q96A23 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
CPNE4Q96A23 SRP9-204ENST00000619790 377 ntTSL 2 BASIC13.84□□□□□ -0.19
CPNE4Q96A23 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
CPNE4Q96A23 MCHR2-201ENST00000281806 2368 ntAPPRIS P1 TSL 2 BASIC13.84□□□□□ -0.19
CPNE4Q96A23 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CPNE4Q96A23 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
CPNE4Q96A23 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
CPNE4Q96A23 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CPNE4Q96A23 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CPNE4Q96A23 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
CPNE4Q96A23 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC13.84□□□□□ -0.19
CPNE4Q96A23 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
CPNE4Q96A23 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC13.84□□□□□ -0.19
CPNE4Q96A23 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
CPNE4Q96A23 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
CPNE4Q96A23 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC13.84□□□□□ -0.19
CPNE4Q96A23 AC239800.3-201ENST00000424684 5243 ntTSL 5 BASIC13.84□□□□□ -0.19
CPNE4Q96A23 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CPNE4Q96A23 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CPNE4Q96A23 TTC28-AS1-207ENST00000428584 5859 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
CPNE4Q96A23 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
CPNE4Q96A23 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.19
CPNE4Q96A23 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC13.83□□□□□ -0.19
CPNE4Q96A23 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC13.83□□□□□ -0.19
CPNE4Q96A23 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC13.83□□□□□ -0.19
CPNE4Q96A23 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC13.83□□□□□ -0.19
CPNE4Q96A23 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC13.83□□□□□ -0.19
CPNE4Q96A23 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
CPNE4Q96A23 GCM2-201ENST00000379491 2441 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
CPNE4Q96A23 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC13.83□□□□□ -0.2
CPNE4Q96A23 MTA3-203ENST00000406652 5484 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
CPNE4Q96A23 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
CPNE4Q96A23 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CPNE4Q96A23 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
CPNE4Q96A23 CICP14-201ENST00000629111 2732 ntBASIC13.83□□□□□ -0.2
CPNE4Q96A23 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC13.83□□□□□ -0.2
CPNE4Q96A23 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC13.83□□□□□ -0.2
CPNE4Q96A23 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC13.83□□□□□ -0.2
CPNE4Q96A23 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC13.83□□□□□ -0.2
CPNE4Q96A23 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CPNE4Q96A23 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CPNE4Q96A23 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CPNE4Q96A23 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
CPNE4Q96A23 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
CPNE4Q96A23 APOA1-205ENST00000375329 927 ntTSL 2 BASIC13.83□□□□□ -0.2
CPNE4Q96A23 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
CPNE4Q96A23 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC13.83□□□□□ -0.2
CPNE4Q96A23 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC13.83□□□□□ -0.2
CPNE4Q96A23 AL512384.1-201ENST00000406683 331 ntBASIC13.83□□□□□ -0.2
CPNE4Q96A23 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC13.83□□□□□ -0.2
CPNE4Q96A23 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC13.83□□□□□ -0.2
CPNE4Q96A23 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC13.83□□□□□ -0.2
CPNE4Q96A23 AC004066.1-201ENST00000502488 802 ntBASIC13.83□□□□□ -0.2
CPNE4Q96A23 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC13.83□□□□□ -0.2
CPNE4Q96A23 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC13.83□□□□□ -0.2
CPNE4Q96A23 RBM7-207ENST00000544582 692 ntTSL 3 BASIC13.83□□□□□ -0.2
CPNE4Q96A23 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC13.83□□□□□ -0.2
CPNE4Q96A23 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
CPNE4Q96A23 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
CPNE4Q96A23 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC13.83□□□□□ -0.2
CPNE4Q96A23 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 36.1 ms