Protein–RNA interactions for Protein: Q8WWI5

SLC44A1, Choline transporter-like protein 1, humanhuman

Predictions only

Length 657 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A1Q8WWI5 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
SLC44A1Q8WWI5 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC15.43■□□□□ 0.06
SLC44A1Q8WWI5 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC15.43■□□□□ 0.06
SLC44A1Q8WWI5 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC15.43■□□□□ 0.06
SLC44A1Q8WWI5 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC15.43■□□□□ 0.06
SLC44A1Q8WWI5 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC15.43■□□□□ 0.06
SLC44A1Q8WWI5 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
SLC44A1Q8WWI5 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC15.43■□□□□ 0.06
SLC44A1Q8WWI5 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC15.43■□□□□ 0.06
SLC44A1Q8WWI5 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC15.43■□□□□ 0.06
SLC44A1Q8WWI5 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC15.43■□□□□ 0.06
SLC44A1Q8WWI5 AC005829.1-201ENST00000570002 483 ntBASIC15.43■□□□□ 0.06
SLC44A1Q8WWI5 MIR4453-201ENST00000584019 89 ntBASIC15.43■□□□□ 0.06
SLC44A1Q8WWI5 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
SLC44A1Q8WWI5 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC15.43■□□□□ 0.06
SLC44A1Q8WWI5 AC139530.3-201ENST00000620344 690 ntBASIC15.43■□□□□ 0.06
SLC44A1Q8WWI5 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC15.43■□□□□ 0.06
SLC44A1Q8WWI5 AL033527.5-202ENST00000641632 1098 ntBASIC15.43■□□□□ 0.06
SLC44A1Q8WWI5 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
SLC44A1Q8WWI5 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
SLC44A1Q8WWI5 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC15.43■□□□□ 0.06
SLC44A1Q8WWI5 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC15.43■□□□□ 0.06
SLC44A1Q8WWI5 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC15.43■□□□□ 0.06
SLC44A1Q8WWI5 LINC00163-201ENST00000434081 2155 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
SLC44A1Q8WWI5 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
SLC44A1Q8WWI5 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
SLC44A1Q8WWI5 GCLM-204ENST00000615724 3008 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
SLC44A1Q8WWI5 CNOT10-201ENST00000328834 2815 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
SLC44A1Q8WWI5 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC15.43■□□□□ 0.06
SLC44A1Q8WWI5 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC15.43■□□□□ 0.06
SLC44A1Q8WWI5 ZNF576-203ENST00000525771 2327 ntAPPRIS P1 TSL 2 BASIC15.43■□□□□ 0.06
SLC44A1Q8WWI5 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC15.43■□□□□ 0.06
SLC44A1Q8WWI5 TNIP1-214ENST00000522226 2238 ntAPPRIS P3 TSL 2 BASIC15.43■□□□□ 0.06
SLC44A1Q8WWI5 AL121723.1-201ENST00000445194 1519 ntBASIC15.43■□□□□ 0.06
SLC44A1Q8WWI5 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
SLC44A1Q8WWI5 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
SLC44A1Q8WWI5 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC15.42■□□□□ 0.06
SLC44A1Q8WWI5 PIDD1-201ENST00000347755 2998 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
SLC44A1Q8WWI5 COL9A2-202ENST00000372748 2862 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
SLC44A1Q8WWI5 CAPN1-224ENST00000533129 2792 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
SLC44A1Q8WWI5 PRKAG2-215ENST00000492843 2699 ntTSL 5 BASIC15.42■□□□□ 0.06
SLC44A1Q8WWI5 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC15.42■□□□□ 0.06
SLC44A1Q8WWI5 PLEKHN1-202ENST00000379409 2455 ntAPPRIS ALT2 TSL 2 BASIC15.42■□□□□ 0.06
SLC44A1Q8WWI5 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
SLC44A1Q8WWI5 CACTIN-203ENST00000429344 3612 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
SLC44A1Q8WWI5 LTBP3-221ENST00000532932 3327 ntTSL 2 BASIC15.42■□□□□ 0.06
SLC44A1Q8WWI5 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
SLC44A1Q8WWI5 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC15.42■□□□□ 0.06
SLC44A1Q8WWI5 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC15.42■□□□□ 0.06
SLC44A1Q8WWI5 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC15.42■□□□□ 0.06
SLC44A1Q8WWI5 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC15.42■□□□□ 0.06
SLC44A1Q8WWI5 ASTN2-206ENST00000361477 4001 ntTSL 5 BASIC15.42■□□□□ 0.06
SLC44A1Q8WWI5 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
SLC44A1Q8WWI5 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
SLC44A1Q8WWI5 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC15.42■□□□□ 0.06
SLC44A1Q8WWI5 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
SLC44A1Q8WWI5 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
SLC44A1Q8WWI5 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
SLC44A1Q8WWI5 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC15.42■□□□□ 0.06
SLC44A1Q8WWI5 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC15.42■□□□□ 0.06
SLC44A1Q8WWI5 KRT18P43-201ENST00000469825 1281 ntBASIC15.42■□□□□ 0.06
SLC44A1Q8WWI5 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC15.42■□□□□ 0.06
SLC44A1Q8WWI5 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC15.42■□□□□ 0.06
SLC44A1Q8WWI5 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC15.42■□□□□ 0.06
SLC44A1Q8WWI5 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC15.42■□□□□ 0.06
SLC44A1Q8WWI5 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
SLC44A1Q8WWI5 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC15.42■□□□□ 0.06
SLC44A1Q8WWI5 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC15.42■□□□□ 0.06
SLC44A1Q8WWI5 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
SLC44A1Q8WWI5 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
SLC44A1Q8WWI5 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
SLC44A1Q8WWI5 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
SLC44A1Q8WWI5 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
SLC44A1Q8WWI5 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
SLC44A1Q8WWI5 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC15.42■□□□□ 0.06
SLC44A1Q8WWI5 APCDD1L-201ENST00000371149 3426 ntAPPRIS P2 TSL 1 (best) BASIC15.42■□□□□ 0.06
SLC44A1Q8WWI5 CEP131-208ENST00000575907 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
SLC44A1Q8WWI5 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
SLC44A1Q8WWI5 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC15.42■□□□□ 0.06
SLC44A1Q8WWI5 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC15.42■□□□□ 0.06
SLC44A1Q8WWI5 ZNF256-201ENST00000282308 2172 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
SLC44A1Q8WWI5 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
SLC44A1Q8WWI5 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
SLC44A1Q8WWI5 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
SLC44A1Q8WWI5 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC15.42■□□□□ 0.06
SLC44A1Q8WWI5 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC15.42■□□□□ 0.06
SLC44A1Q8WWI5 AC015802.1-201ENST00000588104 1449 ntBASIC15.42■□□□□ 0.06
SLC44A1Q8WWI5 MEOX2-201ENST00000262041 2500 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
SLC44A1Q8WWI5 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
SLC44A1Q8WWI5 BANP-203ENST00000393207 2438 ntTSL 2 BASIC15.42■□□□□ 0.06
SLC44A1Q8WWI5 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
SLC44A1Q8WWI5 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
SLC44A1Q8WWI5 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
SLC44A1Q8WWI5 RADIL-201ENST00000399583 3689 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
SLC44A1Q8WWI5 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
SLC44A1Q8WWI5 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
SLC44A1Q8WWI5 INHBA-205ENST00000638023 2002 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
SLC44A1Q8WWI5 TMPRSS6-204ENST00000406856 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
SLC44A1Q8WWI5 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
SLC44A1Q8WWI5 ZMIZ2-202ENST00000309315 5144 ntAPPRIS P4 TSL 2 BASIC15.41■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 39.9 ms