Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 STRN-202ENST00000379213 2254 ntTSL 5 BASIC14.24□□□□□ -0.13
RNF4P78317 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC14.24□□□□□ -0.13
RNF4P78317 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
RNF4P78317 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
RNF4P78317 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
RNF4P78317 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
RNF4P78317 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
RNF4P78317 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
RNF4P78317 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
RNF4P78317 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
RNF4P78317 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC14.24□□□□□ -0.13
RNF4P78317 MXI1-205ENST00000393134 889 ntTSL 2 BASIC14.24□□□□□ -0.13
RNF4P78317 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
RNF4P78317 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC14.24□□□□□ -0.13
RNF4P78317 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC14.24□□□□□ -0.13
RNF4P78317 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC14.24□□□□□ -0.13
RNF4P78317 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
RNF4P78317 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC14.24□□□□□ -0.13
RNF4P78317 USP32P1-208ENST00000506594 1164 ntBASIC14.24□□□□□ -0.13
RNF4P78317 SLC25A47P1-201ENST00000531577 414 ntBASIC14.24□□□□□ -0.13
RNF4P78317 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC14.24□□□□□ -0.13
RNF4P78317 KSR1-207ENST00000578981 748 ntTSL 4 BASIC14.24□□□□□ -0.13
RNF4P78317 AP005019.2-201ENST00000615104 511 ntBASIC14.24□□□□□ -0.13
RNF4P78317 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC14.24□□□□□ -0.13
RNF4P78317 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
RNF4P78317 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC14.24□□□□□ -0.13
RNF4P78317 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC14.24□□□□□ -0.13
RNF4P78317 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC14.24□□□□□ -0.13
RNF4P78317 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
RNF4P78317 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
RNF4P78317 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
RNF4P78317 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC14.24□□□□□ -0.13
RNF4P78317 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
RNF4P78317 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC14.24□□□□□ -0.13
RNF4P78317 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
RNF4P78317 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC14.24□□□□□ -0.13
RNF4P78317 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
RNF4P78317 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
RNF4P78317 HS6ST3-201ENST00000376705 7804 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
RNF4P78317 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC14.24□□□□□ -0.13
RNF4P78317 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC14.24□□□□□ -0.13
RNF4P78317 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
RNF4P78317 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
RNF4P78317 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
RNF4P78317 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
RNF4P78317 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
RNF4P78317 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
RNF4P78317 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
RNF4P78317 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
RNF4P78317 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC14.23□□□□□ -0.13
RNF4P78317 AC134312.5-201ENST00000568031 1313 ntBASIC14.23□□□□□ -0.13
RNF4P78317 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
RNF4P78317 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
RNF4P78317 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
RNF4P78317 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
RNF4P78317 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
RNF4P78317 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
RNF4P78317 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC14.23□□□□□ -0.13
RNF4P78317 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
RNF4P78317 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC14.23□□□□□ -0.13
RNF4P78317 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
RNF4P78317 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
RNF4P78317 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
RNF4P78317 AL645937.2-201ENST00000396808 931 ntBASIC14.23□□□□□ -0.13
RNF4P78317 AC104457.1-201ENST00000401024 814 ntBASIC14.23□□□□□ -0.13
RNF4P78317 GHSR-202ENST00000427970 912 ntBASIC14.23□□□□□ -0.13
RNF4P78317 U91328.1-201ENST00000437528 223 ntBASIC14.23□□□□□ -0.13
RNF4P78317 AC012441.1-201ENST00000446669 685 ntBASIC14.23□□□□□ -0.13
RNF4P78317 AC022137.2-201ENST00000503482 481 ntBASIC14.23□□□□□ -0.13
RNF4P78317 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC14.23□□□□□ -0.13
RNF4P78317 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC14.23□□□□□ -0.13
RNF4P78317 AC106886.1-201ENST00000568660 600 ntBASIC14.23□□□□□ -0.13
RNF4P78317 APOC4-201ENST00000591600 348 ntTSL 3 BASIC14.23□□□□□ -0.13
RNF4P78317 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
RNF4P78317 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC14.23□□□□□ -0.13
RNF4P78317 BTNL10-201ENST00000595971 695 ntBASIC14.23□□□□□ -0.13
RNF4P78317 AC233724.13-201ENST00000598383 410 ntBASIC14.23□□□□□ -0.13
RNF4P78317 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
RNF4P78317 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
RNF4P78317 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
RNF4P78317 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
RNF4P78317 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC14.23□□□□□ -0.13
RNF4P78317 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
RNF4P78317 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
RNF4P78317 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC14.23□□□□□ -0.13
RNF4P78317 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
RNF4P78317 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
RNF4P78317 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
RNF4P78317 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
RNF4P78317 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
RNF4P78317 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC14.22□□□□□ -0.13
RNF4P78317 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
RNF4P78317 C5orf30-202ENST00000510890 2933 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
RNF4P78317 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
RNF4P78317 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
RNF4P78317 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
RNF4P78317 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
RNF4P78317 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC14.22□□□□□ -0.13
RNF4P78317 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
RNF4P78317 MSTO2P-201ENST00000314835 1709 ntBASIC14.22□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 53 ms