Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
PKNOX1P55347 PLA2G4B-202ENST00000458483 2734 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
PKNOX1P55347 ZFYVE28-201ENST00000290974 4131 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
PKNOX1P55347 RSPH9-201ENST00000372163 2534 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
PKNOX1P55347 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
PKNOX1P55347 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
PKNOX1P55347 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
PKNOX1P55347 RLF-201ENST00000372771 6246 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
PKNOX1P55347 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
PKNOX1P55347 MYLK3-201ENST00000394809 6911 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
PKNOX1P55347 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
PKNOX1P55347 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
PKNOX1P55347 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC15.16■□□□□ 0.02
PKNOX1P55347 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
PKNOX1P55347 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
PKNOX1P55347 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
PKNOX1P55347 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
PKNOX1P55347 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
PKNOX1P55347 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC15.16■□□□□ 0.02
PKNOX1P55347 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
PKNOX1P55347 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC15.16■□□□□ 0.02
PKNOX1P55347 AL079307.3-201ENST00000556114 283 ntBASIC15.16■□□□□ 0.02
PKNOX1P55347 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC15.16■□□□□ 0.02
PKNOX1P55347 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC15.16■□□□□ 0.02
PKNOX1P55347 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
PKNOX1P55347 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
PKNOX1P55347 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC15.16■□□□□ 0.02
PKNOX1P55347 FRMD5-201ENST00000402883 4091 ntTSL 5 BASIC15.16■□□□□ 0.02
PKNOX1P55347 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC15.16■□□□□ 0.02
PKNOX1P55347 AKAP2-203ENST00000434623 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
PKNOX1P55347 PRDM4-201ENST00000228437 4210 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
PKNOX1P55347 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
PKNOX1P55347 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC15.16■□□□□ 0.02
PKNOX1P55347 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC15.16■□□□□ 0.02
PKNOX1P55347 MAN1B1-202ENST00000371589 2769 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
PKNOX1P55347 UHRF1-204ENST00000616255 2661 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
PKNOX1P55347 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC15.16■□□□□ 0.02
PKNOX1P55347 KCNT1-209ENST00000490355 3708 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
PKNOX1P55347 KIF19-202ENST00000389916 3643 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
PKNOX1P55347 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
PKNOX1P55347 PPFIA3-203ENST00000602351 4341 ntTSL 5 BASIC15.16■□□□□ 0.02
PKNOX1P55347 POU5F1B-201ENST00000465342 5360 ntAPPRIS P1 TSL 3 BASIC15.16■□□□□ 0.02
PKNOX1P55347 ADAM23-202ENST00000374415 2714 ntAPPRIS ALT1 TSL 5 BASIC15.16■□□□□ 0.02
PKNOX1P55347 CICP14-201ENST00000629111 2732 ntBASIC15.16■□□□□ 0.02
PKNOX1P55347 RIC1-201ENST00000251879 4127 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
PKNOX1P55347 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC15.15■□□□□ 0.02
PKNOX1P55347 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC15.15■□□□□ 0.02
PKNOX1P55347 ATP2C1-214ENST00000508532 4969 ntAPPRIS ALT1 TSL 1 (best) BASIC15.15■□□□□ 0.02
PKNOX1P55347 AC112229.3-201ENST00000603767 3202 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
PKNOX1P55347 AC013271.1-201ENST00000640669 3202 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
PKNOX1P55347 DIP2A-201ENST00000400274 7023 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
PKNOX1P55347 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC15.15■□□□□ 0.02
PKNOX1P55347 CUEDC1-206ENST00000577830 3621 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
PKNOX1P55347 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC15.15■□□□□ 0.02
PKNOX1P55347 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
PKNOX1P55347 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC15.15■□□□□ 0.02
PKNOX1P55347 FEM1B-201ENST00000306917 7122 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
PKNOX1P55347 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC15.15■□□□□ 0.02
PKNOX1P55347 SLC4A7-212ENST00000446700 4000 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
PKNOX1P55347 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
PKNOX1P55347 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC15.15■□□□□ 0.02
PKNOX1P55347 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
PKNOX1P55347 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
PKNOX1P55347 SPDYE7P-202ENST00000420373 878 ntBASIC15.15■□□□□ 0.02
PKNOX1P55347 USP40-206ENST00000443711 628 ntTSL 2 BASIC15.15■□□□□ 0.02
PKNOX1P55347 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC15.15■□□□□ 0.02
PKNOX1P55347 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC15.15■□□□□ 0.02
PKNOX1P55347 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC15.15■□□□□ 0.02
PKNOX1P55347 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC15.15■□□□□ 0.02
PKNOX1P55347 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
PKNOX1P55347 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC15.15■□□□□ 0.02
PKNOX1P55347 AP001059.3-201ENST00000619053 235 ntBASIC15.15■□□□□ 0.02
PKNOX1P55347 MIR6069-201ENST00000620069 79 ntBASIC15.15■□□□□ 0.02
PKNOX1P55347 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
PKNOX1P55347 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC15.15■□□□□ 0.02
PKNOX1P55347 TMEM38A-201ENST00000187762 2649 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
PKNOX1P55347 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
PKNOX1P55347 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC15.15■□□□□ 0.02
PKNOX1P55347 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
PKNOX1P55347 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
PKNOX1P55347 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC15.15■□□□□ 0.02
PKNOX1P55347 COL6A2-202ENST00000310645 3446 ntTSL 5 BASIC15.15■□□□□ 0.02
PKNOX1P55347 TOX3-201ENST00000219746 3233 ntAPPRIS P4 TSL 2 BASIC15.15■□□□□ 0.02
PKNOX1P55347 MYH11-201ENST00000300036 6029 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
PKNOX1P55347 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
PKNOX1P55347 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC15.15■□□□□ 0.02
PKNOX1P55347 KIAA0930-203ENST00000391627 2623 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
PKNOX1P55347 CHD4-201ENST00000357008 6496 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
PKNOX1P55347 NRAS-201ENST00000369535 4449 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
PKNOX1P55347 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC15.14■□□□□ 0.01
PKNOX1P55347 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC15.14■□□□□ 0.01
PKNOX1P55347 SFXN3-202ENST00000393459 3098 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
PKNOX1P55347 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
PKNOX1P55347 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
PKNOX1P55347 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC15.14■□□□□ 0.01
PKNOX1P55347 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC15.14■□□□□ 0.01
PKNOX1P55347 UBTF-201ENST00000302904 4997 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
PKNOX1P55347 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC15.14■□□□□ 0.01
PKNOX1P55347 RALGPS2-204ENST00000367635 5834 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
PKNOX1P55347 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms