Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
FOXA1P55317 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
FOXA1P55317 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC14.9□□□□□ -0.02
FOXA1P55317 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC14.9□□□□□ -0.02
FOXA1P55317 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC14.89□□□□□ -0.03
FOXA1P55317 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
FOXA1P55317 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
FOXA1P55317 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
FOXA1P55317 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
FOXA1P55317 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
FOXA1P55317 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC14.89□□□□□ -0.03
FOXA1P55317 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC14.89□□□□□ -0.03
FOXA1P55317 PRKAG2-215ENST00000492843 2699 ntTSL 5 BASIC14.89□□□□□ -0.03
FOXA1P55317 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
FOXA1P55317 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
FOXA1P55317 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
FOXA1P55317 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC14.89□□□□□ -0.03
FOXA1P55317 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC14.89□□□□□ -0.03
FOXA1P55317 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC14.89□□□□□ -0.03
FOXA1P55317 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC14.89□□□□□ -0.03
FOXA1P55317 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
FOXA1P55317 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC14.89□□□□□ -0.03
FOXA1P55317 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC14.89□□□□□ -0.03
FOXA1P55317 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
FOXA1P55317 TSPAN14-210ENST00000616406 2436 ntTSL 2 BASIC14.89□□□□□ -0.03
FOXA1P55317 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
FOXA1P55317 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
FOXA1P55317 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC14.89□□□□□ -0.03
FOXA1P55317 XRCC1-201ENST00000262887 2802 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
FOXA1P55317 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC14.89□□□□□ -0.03
FOXA1P55317 CACTIN-203ENST00000429344 3612 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
FOXA1P55317 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
FOXA1P55317 TSC22D1-211ENST00000501704 4026 ntTSL 2 BASIC14.89□□□□□ -0.03
FOXA1P55317 TPO-201ENST00000329066 3138 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
FOXA1P55317 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
FOXA1P55317 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
FOXA1P55317 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
FOXA1P55317 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC14.89□□□□□ -0.03
FOXA1P55317 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC14.89□□□□□ -0.03
FOXA1P55317 RNF182-208ENST00000544682 3495 ntAPPRIS P1 TSL 4 BASIC14.89□□□□□ -0.03
FOXA1P55317 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
FOXA1P55317 AC138969.3-201ENST00000546612 1459 ntBASIC14.89□□□□□ -0.03
FOXA1P55317 AC138932.2-201ENST00000548268 1459 ntBASIC14.89□□□□□ -0.03
FOXA1P55317 AC126755.4-201ENST00000549796 1459 ntBASIC14.89□□□□□ -0.03
FOXA1P55317 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC14.88□□□□□ -0.03
FOXA1P55317 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC14.88□□□□□ -0.03
FOXA1P55317 PKN1-202ENST00000342216 2960 ntTSL 2 BASIC14.88□□□□□ -0.03
FOXA1P55317 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
FOXA1P55317 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
FOXA1P55317 LRRN1-201ENST00000319331 3823 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
FOXA1P55317 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
FOXA1P55317 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
FOXA1P55317 BX640514.1-201ENST00000583223 1918 ntBASIC14.88□□□□□ -0.03
FOXA1P55317 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC14.88□□□□□ -0.03
FOXA1P55317 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC14.88□□□□□ -0.03
FOXA1P55317 TMCC2-202ENST00000330675 2780 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
FOXA1P55317 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
FOXA1P55317 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
FOXA1P55317 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
FOXA1P55317 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
FOXA1P55317 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
FOXA1P55317 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
FOXA1P55317 SPATA16-201ENST00000351008 2106 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
FOXA1P55317 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC14.88□□□□□ -0.03
FOXA1P55317 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC14.88□□□□□ -0.03
FOXA1P55317 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
FOXA1P55317 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
FOXA1P55317 AC092580.3-201ENST00000430932 139 ntBASIC14.88□□□□□ -0.03
FOXA1P55317 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
FOXA1P55317 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC14.88□□□□□ -0.03
FOXA1P55317 AC125807.1-201ENST00000483097 614 ntBASIC14.88□□□□□ -0.03
FOXA1P55317 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC14.88□□□□□ -0.03
FOXA1P55317 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
FOXA1P55317 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC14.88□□□□□ -0.03
FOXA1P55317 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC14.88□□□□□ -0.03
FOXA1P55317 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC14.88□□□□□ -0.03
FOXA1P55317 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC14.88□□□□□ -0.03
FOXA1P55317 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC14.88□□□□□ -0.03
FOXA1P55317 AL844908.2-201ENST00000609461 460 ntBASIC14.88□□□□□ -0.03
FOXA1P55317 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC14.88□□□□□ -0.03
FOXA1P55317 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
FOXA1P55317 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
FOXA1P55317 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC14.88□□□□□ -0.03
FOXA1P55317 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
FOXA1P55317 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
FOXA1P55317 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC14.88□□□□□ -0.03
FOXA1P55317 ASTN2-206ENST00000361477 4001 ntTSL 5 BASIC14.88□□□□□ -0.03
FOXA1P55317 ZNF785-202ENST00000470110 2867 ntAPPRIS ALT2 TSL 2 BASIC14.88□□□□□ -0.03
FOXA1P55317 CLCN1-201ENST00000343257 3172 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
FOXA1P55317 C17orf107-201ENST00000381365 3199 ntAPPRIS P2 TSL 2 BASIC14.88□□□□□ -0.03
FOXA1P55317 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
FOXA1P55317 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
FOXA1P55317 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC14.88□□□□□ -0.03
FOXA1P55317 SCFD2-201ENST00000388940 2221 ntTSL 2 BASIC14.88□□□□□ -0.03
FOXA1P55317 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC14.88□□□□□ -0.03
FOXA1P55317 DUSP27-201ENST00000271385 3597 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
FOXA1P55317 RSPRY1-202ENST00000537866 3586 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
FOXA1P55317 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
FOXA1P55317 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
FOXA1P55317 ABR-228ENST00000574437 3196 ntTSL 5 BASIC14.87□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 65.7 ms