Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC14.54□□□□□ -0.08
RFX3P48380 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
RFX3P48380 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC14.54□□□□□ -0.08
RFX3P48380 C18orf15-201ENST00000623680 2534 ntBASIC14.54□□□□□ -0.08
RFX3P48380 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
RFX3P48380 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC14.54□□□□□ -0.08
RFX3P48380 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC14.54□□□□□ -0.08
RFX3P48380 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
RFX3P48380 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
RFX3P48380 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
RFX3P48380 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
RFX3P48380 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
RFX3P48380 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
RFX3P48380 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
RFX3P48380 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
RFX3P48380 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
RFX3P48380 BAIAP3-202ENST00000397488 4583 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
RFX3P48380 KCP-206ENST00000613019 4853 ntAPPRIS P5 TSL 5 BASIC14.54□□□□□ -0.08
RFX3P48380 SSTR2-201ENST00000357585 7683 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
RFX3P48380 SH3KBP1-205ENST00000397821 4731 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
RFX3P48380 ZNF541-203ENST00000391901 4580 ntAPPRIS P2 TSL 5 BASIC14.53□□□□□ -0.08
RFX3P48380 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
RFX3P48380 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC14.53□□□□□ -0.08
RFX3P48380 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC14.53□□□□□ -0.08
RFX3P48380 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC14.53□□□□□ -0.08
RFX3P48380 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC14.53□□□□□ -0.08
RFX3P48380 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
RFX3P48380 EDEM3-201ENST00000318130 6898 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
RFX3P48380 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
RFX3P48380 RIC1-204ENST00000418622 6658 ntTSL 5 BASIC14.53□□□□□ -0.08
RFX3P48380 GOLGA8DP-202ENST00000341390 2184 ntBASIC14.53□□□□□ -0.08
RFX3P48380 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
RFX3P48380 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
RFX3P48380 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
RFX3P48380 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC14.53□□□□□ -0.08
RFX3P48380 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC14.53□□□□□ -0.08
RFX3P48380 LINC00174-204ENST00000421767 4702 ntTSL 5 BASIC14.53□□□□□ -0.08
RFX3P48380 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
RFX3P48380 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
RFX3P48380 SFMBT1-201ENST00000394752 4548 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
RFX3P48380 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
RFX3P48380 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC14.53□□□□□ -0.08
RFX3P48380 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC14.53□□□□□ -0.08
RFX3P48380 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
RFX3P48380 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
RFX3P48380 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
RFX3P48380 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC14.53□□□□□ -0.08
RFX3P48380 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
RFX3P48380 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC14.53□□□□□ -0.08
RFX3P48380 AC074338.1-201ENST00000416825 156 ntBASIC14.53□□□□□ -0.08
RFX3P48380 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC14.53□□□□□ -0.08
RFX3P48380 HNRNPA1P40-201ENST00000426371 1278 ntBASIC14.53□□□□□ -0.08
RFX3P48380 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC14.53□□□□□ -0.08
RFX3P48380 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC14.53□□□□□ -0.08
RFX3P48380 SDHAP3-202ENST00000515467 728 ntBASIC14.53□□□□□ -0.08
RFX3P48380 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
RFX3P48380 RAB35-202ENST00000534951 939 ntTSL 2 BASIC14.53□□□□□ -0.08
RFX3P48380 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC14.53□□□□□ -0.08
RFX3P48380 DUT-210ENST00000559935 569 ntTSL 3 BASIC14.53□□□□□ -0.08
RFX3P48380 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC14.53□□□□□ -0.08
RFX3P48380 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC14.53□□□□□ -0.08
RFX3P48380 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC14.53□□□□□ -0.08
RFX3P48380 TCHH-202ENST00000614923 6995 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
RFX3P48380 OTOF-202ENST00000338581 4954 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
RFX3P48380 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
RFX3P48380 CELP-203ENST00000624767 2414 ntTSL 5 BASIC14.53□□□□□ -0.08
RFX3P48380 NHSL1-202ENST00000343505 6535 ntAPPRIS P3 TSL 5 BASIC14.53□□□□□ -0.08
RFX3P48380 PPARGC1B-203ENST00000394320 4803 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
RFX3P48380 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
RFX3P48380 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC14.53□□□□□ -0.08
RFX3P48380 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC14.52□□□□□ -0.08
RFX3P48380 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC14.52□□□□□ -0.08
RFX3P48380 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
RFX3P48380 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
RFX3P48380 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC14.52□□□□□ -0.08
RFX3P48380 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC14.52□□□□□ -0.08
RFX3P48380 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
RFX3P48380 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC14.52□□□□□ -0.08
RFX3P48380 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC14.52□□□□□ -0.08
RFX3P48380 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC14.52□□□□□ -0.08
RFX3P48380 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC14.52□□□□□ -0.08
RFX3P48380 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
RFX3P48380 PDXK-210ENST00000468090 7297 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
RFX3P48380 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC14.52□□□□□ -0.08
RFX3P48380 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC14.52□□□□□ -0.08
RFX3P48380 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC14.52□□□□□ -0.08
RFX3P48380 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
RFX3P48380 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC14.52□□□□□ -0.08
RFX3P48380 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
RFX3P48380 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC14.52□□□□□ -0.09
RFX3P48380 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC14.52□□□□□ -0.09
RFX3P48380 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC14.52□□□□□ -0.09
RFX3P48380 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC14.52□□□□□ -0.09
RFX3P48380 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC14.52□□□□□ -0.09
RFX3P48380 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC14.52□□□□□ -0.09
RFX3P48380 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC14.52□□□□□ -0.09
RFX3P48380 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC14.52□□□□□ -0.09
RFX3P48380 TIMM17BP1-201ENST00000545713 516 ntBASIC14.52□□□□□ -0.09
RFX3P48380 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.09
RFX3P48380 SSH2-210ENST00000582084 560 ntTSL 3 BASIC14.52□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 86.1 ms