Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CXCL12P48061 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CXCL12P48061 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CXCL12P48061 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC15.12■□□□□ 0.01
CXCL12P48061 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC15.12■□□□□ 0.01
CXCL12P48061 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
CXCL12P48061 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CXCL12P48061 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
CXCL12P48061 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC15.11■□□□□ 0.01
CXCL12P48061 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC15.11■□□□□ 0.01
CXCL12P48061 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
CXCL12P48061 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC15.11■□□□□ 0.01
CXCL12P48061 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CXCL12P48061 KIAA1614-AS1-201ENST00000415647 1440 ntTSL 2 BASIC15.11■□□□□ 0.01
CXCL12P48061 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC15.11■□□□□ 0.01
CXCL12P48061 AC127383.1-201ENST00000444697 1800 ntBASIC15.11■□□□□ 0.01
CXCL12P48061 ARHGAP25-216ENST00000497079 1843 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CXCL12P48061 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC15.11■□□□□ 0.01
CXCL12P48061 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
CXCL12P48061 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CXCL12P48061 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
CXCL12P48061 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CXCL12P48061 RPS9-201ENST00000302907 829 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CXCL12P48061 RPS16-202ENST00000339471 643 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CXCL12P48061 ETV2-201ENST00000379023 926 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
CXCL12P48061 AC245369.1-201ENST00000390634 434 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
CXCL12P48061 CALCA-203ENST00000396372 581 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CXCL12P48061 AC010141.1-201ENST00000411585 623 ntBASIC15.11■□□□□ 0.01
CXCL12P48061 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC15.11■□□□□ 0.01
CXCL12P48061 IDI2-AS1-201ENST00000420381 672 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CXCL12P48061 AC012360.1-201ENST00000433219 674 ntTSL 5 BASIC15.11■□□□□ 0.01
CXCL12P48061 AC078991.1-201ENST00000437297 610 ntBASIC15.11■□□□□ 0.01
CXCL12P48061 HLA-J-204ENST00000495278 958 ntBASIC15.11■□□□□ 0.01
CXCL12P48061 CFL1-206ENST00000527344 962 ntTSL 2 BASIC15.11■□□□□ 0.01
CXCL12P48061 MAP3K14-AS1-210ENST00000592422 831 ntTSL 3 BASIC15.11■□□□□ 0.01
CXCL12P48061 AC136475.1-202ENST00000602429 1151 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CXCL12P48061 AC087045.2-201ENST00000606279 1003 ntBASIC15.11■□□□□ 0.01
CXCL12P48061 AC092171.5-201ENST00000608012 942 ntBASIC15.11■□□□□ 0.01
CXCL12P48061 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC15.11■□□□□ 0.01
CXCL12P48061 CDK7-214ENST00000626796 358 ntTSL 5 BASIC15.11■□□□□ 0.01
CXCL12P48061 CDK7-215ENST00000629350 1149 ntTSL 5 BASIC15.11■□□□□ 0.01
CXCL12P48061 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
CXCL12P48061 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
CXCL12P48061 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
CXCL12P48061 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CXCL12P48061 AC022211.2-201ENST00000585075 2527 ntBASIC15.11■□□□□ 0.01
CXCL12P48061 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
CXCL12P48061 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CXCL12P48061 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CXCL12P48061 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC15.11■□□□□ 0.01
CXCL12P48061 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CXCL12P48061 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC15.11■□□□□ 0.01
CXCL12P48061 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CXCL12P48061 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CXCL12P48061 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CXCL12P48061 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CXCL12P48061 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CXCL12P48061 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CXCL12P48061 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CXCL12P48061 OXNAD1-202ENST00000435829 1643 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
CXCL12P48061 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CXCL12P48061 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
CXCL12P48061 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC15.1■□□□□ 0.01
CXCL12P48061 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC15.1■□□□□ 0.01
CXCL12P48061 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
CXCL12P48061 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
CXCL12P48061 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
CXCL12P48061 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC15.1■□□□□ 0.01
CXCL12P48061 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CXCL12P48061 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CXCL12P48061 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
CXCL12P48061 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CXCL12P48061 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CXCL12P48061 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CXCL12P48061 ANK1-203ENST00000314214 1185 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CXCL12P48061 ODF4-201ENST00000328248 1156 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
CXCL12P48061 TMEM14B-202ENST00000379542 975 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CXCL12P48061 MIR663AHG-201ENST00000427348 1213 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CXCL12P48061 FBXO24-204ENST00000465843 957 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CXCL12P48061 TVP23C-205ENST00000518321 1080 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
CXCL12P48061 NAT9-211ENST00000580632 799 ntTSL 3 BASIC15.1■□□□□ 0.01
CXCL12P48061 AC005779.2-201ENST00000593083 550 ntAPPRIS P1 TSL 4 BASIC15.1■□□□□ 0.01
CXCL12P48061 ROPN1-211ENST00000620893 1006 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CXCL12P48061 AC051619.9-201ENST00000623237 597 ntBASIC15.1■□□□□ 0.01
CXCL12P48061 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC15.1■□□□□ 0.01
CXCL12P48061 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
CXCL12P48061 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
CXCL12P48061 EPHX1-202ENST00000366837 1780 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CXCL12P48061 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC15.1■□□□□ 0.01
CXCL12P48061 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CXCL12P48061 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CXCL12P48061 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
CXCL12P48061 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CXCL12P48061 FOXO4-201ENST00000341558 1353 ntTSL 5 BASIC15.1■□□□□ 0.01
CXCL12P48061 AMT-204ENST00000427987 1646 ntTSL 5 BASIC15.1■□□□□ 0.01
CXCL12P48061 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CXCL12P48061 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CXCL12P48061 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CXCL12P48061 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
CXCL12P48061 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 86.2 ms