Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
CUX1P39880 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC25.01■■□□□ 1.59
CUX1P39880 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
CUX1P39880 IGHV3-48-201ENST00000390624 432 ntAPPRIS P1 BASIC25.01■■□□□ 1.59
CUX1P39880 HDDC2-202ENST00000398153 918 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
CUX1P39880 AC079112.1-201ENST00000454972 939 ntBASIC25.01■■□□□ 1.59
CUX1P39880 AC141586.1-203ENST00000567242 366 ntBASIC25.01■■□□□ 1.59
CUX1P39880 PGPEP1-206ENST00000597431 545 ntTSL 5 BASIC25.01■■□□□ 1.59
CUX1P39880 AC027601.3-201ENST00000622907 509 ntBASIC25.01■■□□□ 1.59
CUX1P39880 AL161773.1-201ENST00000624845 863 ntBASIC25.01■■□□□ 1.59
CUX1P39880 PRKAB1-210ENST00000630317 258 ntTSL 2 BASIC25.01■■□□□ 1.59
CUX1P39880 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC25■■□□□ 1.59
CUX1P39880 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC25■■□□□ 1.59
CUX1P39880 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC25■■□□□ 1.59
CUX1P39880 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC25■■□□□ 1.59
CUX1P39880 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC25■■□□□ 1.59
CUX1P39880 KCTD1-207ENST00000580059 1425 ntAPPRIS P1 TSL 3 BASIC25■■□□□ 1.59
CUX1P39880 LINC00513-201ENST00000447430 1616 ntTSL 5 BASIC25■■□□□ 1.59
CUX1P39880 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC25■■□□□ 1.59
CUX1P39880 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC25■■□□□ 1.59
CUX1P39880 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC25■■□□□ 1.59
CUX1P39880 HPGD-203ENST00000422112 805 ntTSL 2 BASIC25■■□□□ 1.59
CUX1P39880 PTPA-215ENST00000432124 567 ntTSL 4 BASIC25■■□□□ 1.59
CUX1P39880 HLA-DQB2-232ENST00000437316 1214 ntAPPRIS P1 BASIC25■■□□□ 1.59
CUX1P39880 NAA40-206ENST00000542163 1035 ntTSL 2 BASIC25■■□□□ 1.59
CUX1P39880 AL022334.2-201ENST00000610000 484 ntBASIC25■■□□□ 1.59
CUX1P39880 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC25■■□□□ 1.59
CUX1P39880 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC25■■□□□ 1.59
CUX1P39880 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
CUX1P39880 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
CUX1P39880 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC25■■□□□ 1.59
CUX1P39880 MAP2K6-205ENST00000589647 1512 ntTSL 5 BASIC25■■□□□ 1.59
CUX1P39880 ABR-203ENST00000536794 2213 ntTSL 2 BASIC24.99■■□□□ 1.59
CUX1P39880 MCC-208ENST00000514701 2855 ntTSL 2 BASIC24.99■■□□□ 1.59
CUX1P39880 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC24.99■■□□□ 1.59
CUX1P39880 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC24.99■■□□□ 1.59
CUX1P39880 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC24.99■■□□□ 1.59
CUX1P39880 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC24.99■■□□□ 1.59
CUX1P39880 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC24.99■■□□□ 1.59
CUX1P39880 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC24.99■■□□□ 1.59
CUX1P39880 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC24.99■■□□□ 1.59
CUX1P39880 AL357563.1-201ENST00000404728 395 ntBASIC24.99■■□□□ 1.59
CUX1P39880 SLC13A3-205ENST00000417157 876 ntTSL 1 (best) BASIC24.99■■□□□ 1.59
CUX1P39880 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC24.99■■□□□ 1.59
CUX1P39880 AL627422.1-201ENST00000434104 580 ntBASIC24.99■■□□□ 1.59
CUX1P39880 TREX1-202ENST00000444177 1200 ntTSL 1 (best) BASIC24.99■■□□□ 1.59
CUX1P39880 Z99943.1-201ENST00000451545 718 ntTSL 3 BASIC24.99■■□□□ 1.59
CUX1P39880 CHCHD2P9-201ENST00000461726 456 ntBASIC24.99■■□□□ 1.59
CUX1P39880 NEU3-207ENST00000534628 746 ntTSL 2 BASIC24.99■■□□□ 1.59
CUX1P39880 LINC00923-205ENST00000615399 932 ntTSL 5 BASIC24.99■■□□□ 1.59
CUX1P39880 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC24.99■■□□□ 1.59
CUX1P39880 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC24.99■■□□□ 1.59
CUX1P39880 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC24.99■■□□□ 1.59
CUX1P39880 P2RX3-201ENST00000263314 1831 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
CUX1P39880 SNRPN-203ENST00000400097 1605 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
CUX1P39880 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
CUX1P39880 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
CUX1P39880 MANEAL-201ENST00000329006 1930 ntTSL 2 BASIC24.99■■□□□ 1.59
CUX1P39880 AP005117.1-202ENST00000581724 1908 ntBASIC24.99■■□□□ 1.59
CUX1P39880 SGCE-204ENST00000428696 1409 ntTSL 1 (best) BASIC24.99■■□□□ 1.59
CUX1P39880 PRIMA1-201ENST00000316227 1080 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
CUX1P39880 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC24.98■■□□□ 1.59
CUX1P39880 AC012362.1-201ENST00000434906 739 ntBASIC24.98■■□□□ 1.59
CUX1P39880 NCK1-AS1-203ENST00000474250 827 ntTSL 2 BASIC24.98■■□□□ 1.59
CUX1P39880 POLD4-208ENST00000532830 904 ntTSL 3 BASIC24.98■■□□□ 1.59
CUX1P39880 NPTN-204ENST00000562924 1094 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
CUX1P39880 UPF3AP2-202ENST00000578315 730 ntTSL 5 BASIC24.98■■□□□ 1.59
CUX1P39880 AP005901.3-201ENST00000581666 415 ntTSL 3 BASIC24.98■■□□□ 1.59
CUX1P39880 LINC01783-202ENST00000614408 828 ntBASIC24.98■■□□□ 1.59
CUX1P39880 MIR6769A-201ENST00000617340 73 ntBASIC24.98■■□□□ 1.59
CUX1P39880 BX284668.2-205ENST00000619677 828 ntBASIC24.98■■□□□ 1.59
CUX1P39880 ADH5-213ENST00000626055 1299 ntTSL 5 BASIC24.98■■□□□ 1.59
CUX1P39880 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
CUX1P39880 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
CUX1P39880 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC24.98■■□□□ 1.59
CUX1P39880 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC24.98■■□□□ 1.59
CUX1P39880 MIR22HG-201ENST00000334146 1383 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
CUX1P39880 NDUFB6-203ENST00000379847 1366 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
CUX1P39880 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC24.98■■□□□ 1.59
CUX1P39880 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC24.98■■□□□ 1.59
CUX1P39880 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
CUX1P39880 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC24.98■■□□□ 1.59
CUX1P39880 DKFZP434H168-201ENST00000567381 1905 ntBASIC24.97■■□□□ 1.59
CUX1P39880 LINC00665-205ENST00000585356 1557 ntTSL 2 BASIC24.97■■□□□ 1.59
CUX1P39880 CMTM5-201ENST00000339180 1173 ntTSL 1 (best) BASIC24.97■■□□□ 1.59
CUX1P39880 CMTM5-202ENST00000342473 725 ntTSL 1 (best) BASIC24.97■■□□□ 1.59
CUX1P39880 RAB25-201ENST00000361084 1110 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
CUX1P39880 CMTM5-205ENST00000397227 818 ntTSL 1 (best) BASIC24.97■■□□□ 1.59
CUX1P39880 COPS7B-205ENST00000409295 1009 ntTSL 1 (best) BASIC24.97■■□□□ 1.59
CUX1P39880 TSPY25P-201ENST00000429463 745 ntBASIC24.97■■□□□ 1.59
CUX1P39880 LINC00028-201ENST00000435497 587 ntTSL 2 BASIC24.97■■□□□ 1.59
CUX1P39880 RN7SL81P-201ENST00000493781 261 ntBASIC24.97■■□□□ 1.59
CUX1P39880 AC108199.1-201ENST00000504249 508 ntTSL 3 BASIC24.97■■□□□ 1.59
CUX1P39880 LINC01598-205ENST00000508763 719 ntTSL 5 BASIC24.97■■□□□ 1.59
CUX1P39880 VDAC3-211ENST00000522572 799 ntTSL 5 BASIC24.97■■□□□ 1.59
CUX1P39880 CMTM5-208ENST00000555731 831 ntTSL 1 (best) BASIC24.97■■□□□ 1.59
CUX1P39880 FAM104A-204ENST00000580032 451 ntTSL 3 BASIC24.97■■□□□ 1.59
CUX1P39880 AC011472.1-201ENST00000588634 569 ntTSL 4 BASIC24.97■■□□□ 1.59
CUX1P39880 HIST1H2BE-201ENST00000614097 497 ntAPPRIS P1 BASIC24.97■■□□□ 1.59
CUX1P39880 RPS10-207ENST00000621356 784 ntAPPRIS P1 TSL 2 BASIC24.97■■□□□ 1.59
Retrieved 100 of 98,524 protein–RNA pairs in 78.2 ms