Protein–RNA interactions for Protein: P19447

ERCC3, TFIIH basal transcription factor complex helicase XPB subunit, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC3P19447 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC17.82■□□□□ 0.44
ERCC3P19447 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
ERCC3P19447 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC17.82■□□□□ 0.44
ERCC3P19447 TCAF2P1-201ENST00000291129 2421 ntBASIC17.82■□□□□ 0.44
ERCC3P19447 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
ERCC3P19447 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
ERCC3P19447 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
ERCC3P19447 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
ERCC3P19447 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
ERCC3P19447 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
ERCC3P19447 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
ERCC3P19447 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
ERCC3P19447 SLC25A19-202ENST00000375261 1486 ntTSL 5 BASIC17.82■□□□□ 0.44
ERCC3P19447 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
ERCC3P19447 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC17.81■□□□□ 0.44
ERCC3P19447 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
ERCC3P19447 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC17.81■□□□□ 0.44
ERCC3P19447 CRCP-201ENST00000338592 1393 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
ERCC3P19447 AL138709.1-201ENST00000614840 1693 ntBASIC17.81■□□□□ 0.44
ERCC3P19447 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
ERCC3P19447 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
ERCC3P19447 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC17.81■□□□□ 0.44
ERCC3P19447 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
ERCC3P19447 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
ERCC3P19447 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
ERCC3P19447 KLK1-201ENST00000301420 866 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
ERCC3P19447 MIR326-201ENST00000362220 95 ntBASIC17.81■□□□□ 0.44
ERCC3P19447 GUK1-206ENST00000366723 845 ntTSL 5 BASIC17.81■□□□□ 0.44
ERCC3P19447 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
ERCC3P19447 GPAA1P2-201ENST00000417923 928 ntBASIC17.81■□□□□ 0.44
ERCC3P19447 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC17.81■□□□□ 0.44
ERCC3P19447 AURKB-202ENST00000534871 1167 ntTSL 2 BASIC17.81■□□□□ 0.44
ERCC3P19447 C12orf49-204ENST00000548356 923 ntTSL 2 BASIC17.81■□□□□ 0.44
ERCC3P19447 C2orf69P2-201ENST00000562032 1123 ntBASIC17.81■□□□□ 0.44
ERCC3P19447 AP003096.1-203ENST00000564469 563 ntTSL 3 BASIC17.81■□□□□ 0.44
ERCC3P19447 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC17.81■□□□□ 0.44
ERCC3P19447 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
ERCC3P19447 UBL5-208ENST00000593087 320 ntTSL 3 BASIC17.81■□□□□ 0.44
ERCC3P19447 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
ERCC3P19447 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC17.81■□□□□ 0.44
ERCC3P19447 AC138951.2-201ENST00000623455 1161 ntBASIC17.81■□□□□ 0.44
ERCC3P19447 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC17.81■□□□□ 0.44
ERCC3P19447 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC17.81■□□□□ 0.44
ERCC3P19447 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC17.81■□□□□ 0.44
ERCC3P19447 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
ERCC3P19447 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
ERCC3P19447 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
ERCC3P19447 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
ERCC3P19447 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
ERCC3P19447 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC17.81■□□□□ 0.44
ERCC3P19447 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC17.81■□□□□ 0.44
ERCC3P19447 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC17.81■□□□□ 0.44
ERCC3P19447 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC17.8■□□□□ 0.44
ERCC3P19447 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC17.8■□□□□ 0.44
ERCC3P19447 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
ERCC3P19447 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
ERCC3P19447 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC17.8■□□□□ 0.44
ERCC3P19447 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
ERCC3P19447 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
ERCC3P19447 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
ERCC3P19447 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC17.8■□□□□ 0.44
ERCC3P19447 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
ERCC3P19447 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
ERCC3P19447 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
ERCC3P19447 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
ERCC3P19447 KRT8P35-201ENST00000483942 1338 ntBASIC17.8■□□□□ 0.44
ERCC3P19447 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
ERCC3P19447 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC17.8■□□□□ 0.44
ERCC3P19447 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
ERCC3P19447 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
ERCC3P19447 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
ERCC3P19447 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
ERCC3P19447 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
ERCC3P19447 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC17.8■□□□□ 0.44
ERCC3P19447 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC17.8■□□□□ 0.44
ERCC3P19447 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC17.8■□□□□ 0.44
ERCC3P19447 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC17.8■□□□□ 0.44
ERCC3P19447 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC17.8■□□□□ 0.44
ERCC3P19447 ANKHD1-202ENST00000297183 7606 ntTSL 5 BASIC17.8■□□□□ 0.44
ERCC3P19447 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC17.8■□□□□ 0.44
ERCC3P19447 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC17.8■□□□□ 0.44
ERCC3P19447 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
ERCC3P19447 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
ERCC3P19447 ACE-203ENST00000413513 2237 ntTSL 2 BASIC17.8■□□□□ 0.44
ERCC3P19447 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
ERCC3P19447 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC17.8■□□□□ 0.44
ERCC3P19447 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
ERCC3P19447 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
ERCC3P19447 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC17.8■□□□□ 0.44
ERCC3P19447 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
ERCC3P19447 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
ERCC3P19447 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
ERCC3P19447 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC17.79■□□□□ 0.44
ERCC3P19447 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
ERCC3P19447 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC17.79■□□□□ 0.44
ERCC3P19447 C8orf49-201ENST00000525043 1968 ntBASIC17.79■□□□□ 0.44
ERCC3P19447 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
ERCC3P19447 AC069224.1-201ENST00000566372 1715 ntBASIC17.79■□□□□ 0.44
ERCC3P19447 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
ERCC3P19447 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC17.79■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms