Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 SYS1-203ENST00000414310 795 ntTSL 3 BASIC14.66□□□□□ -0.06
SDC1P18827 AC114501.2-201ENST00000439631 535 ntBASIC14.66□□□□□ -0.06
SDC1P18827 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC14.66□□□□□ -0.06
SDC1P18827 FAM86GP-201ENST00000448322 971 ntBASIC14.66□□□□□ -0.06
SDC1P18827 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC14.66□□□□□ -0.06
SDC1P18827 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC14.66□□□□□ -0.06
SDC1P18827 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC14.66□□□□□ -0.06
SDC1P18827 SAMD11P1-201ENST00000571429 661 ntBASIC14.66□□□□□ -0.06
SDC1P18827 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC14.66□□□□□ -0.06
SDC1P18827 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
SDC1P18827 AL590560.3-201ENST00000623350 461 ntBASIC14.66□□□□□ -0.06
SDC1P18827 AL158212.4-201ENST00000624062 1286 ntBASIC14.66□□□□□ -0.06
SDC1P18827 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
SDC1P18827 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SDC1P18827 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
SDC1P18827 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC14.66□□□□□ -0.06
SDC1P18827 DLX6-202ENST00000518156 2304 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
SDC1P18827 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
SDC1P18827 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
SDC1P18827 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SDC1P18827 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SDC1P18827 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC14.66□□□□□ -0.06
SDC1P18827 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SDC1P18827 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC14.66□□□□□ -0.06
SDC1P18827 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SDC1P18827 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC14.66□□□□□ -0.06
SDC1P18827 MTHFR-210ENST00000641407 2387 ntBASIC14.66□□□□□ -0.06
SDC1P18827 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC14.66□□□□□ -0.06
SDC1P18827 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
SDC1P18827 PKD1P5-201ENST00000532415 10291 ntBASIC14.65□□□□□ -0.06
SDC1P18827 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
SDC1P18827 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC14.65□□□□□ -0.06
SDC1P18827 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
SDC1P18827 AC018529.2-202ENST00000611482 3087 ntBASIC14.65□□□□□ -0.06
SDC1P18827 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC14.65□□□□□ -0.06
SDC1P18827 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
SDC1P18827 SF1-209ENST00000433274 2317 ntTSL 2 BASIC14.65□□□□□ -0.06
SDC1P18827 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC14.65□□□□□ -0.06
SDC1P18827 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC14.65□□□□□ -0.06
SDC1P18827 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
SDC1P18827 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
SDC1P18827 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
SDC1P18827 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
SDC1P18827 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
SDC1P18827 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
SDC1P18827 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
SDC1P18827 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC14.65□□□□□ -0.06
SDC1P18827 TSSK5P-201ENST00000423978 907 ntBASIC14.65□□□□□ -0.06
SDC1P18827 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC14.65□□□□□ -0.06
SDC1P18827 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC14.65□□□□□ -0.06
SDC1P18827 TIMM17BP1-201ENST00000545713 516 ntBASIC14.65□□□□□ -0.06
SDC1P18827 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC14.65□□□□□ -0.06
SDC1P18827 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC14.65□□□□□ -0.06
SDC1P18827 AP001160.2-201ENST00000596071 487 ntBASIC14.65□□□□□ -0.06
SDC1P18827 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC14.65□□□□□ -0.06
SDC1P18827 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
SDC1P18827 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
SDC1P18827 AMT-204ENST00000427987 1646 ntTSL 5 BASIC14.65□□□□□ -0.06
SDC1P18827 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
SDC1P18827 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
SDC1P18827 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC14.65□□□□□ -0.06
SDC1P18827 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
SDC1P18827 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
SDC1P18827 ABCG4-205ENST00000619701 3852 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
SDC1P18827 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC14.64□□□□□ -0.07
SDC1P18827 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC14.64□□□□□ -0.07
SDC1P18827 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC14.64□□□□□ -0.07
SDC1P18827 CATSPER4-202ENST00000456354 1912 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
SDC1P18827 AC007787.1-201ENST00000588095 1583 ntBASIC14.64□□□□□ -0.07
SDC1P18827 ADORA1-201ENST00000309502 2896 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
SDC1P18827 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC14.64□□□□□ -0.07
SDC1P18827 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
SDC1P18827 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
SDC1P18827 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
SDC1P18827 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
SDC1P18827 FLJ16779-201ENST00000612722 7638 ntBASIC14.64□□□□□ -0.07
SDC1P18827 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
SDC1P18827 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
SDC1P18827 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
SDC1P18827 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC14.64□□□□□ -0.07
SDC1P18827 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
SDC1P18827 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
SDC1P18827 USP28-214ENST00000545540 3431 ntTSL 2 BASIC14.64□□□□□ -0.07
SDC1P18827 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
SDC1P18827 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC14.64□□□□□ -0.07
SDC1P18827 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC14.64□□□□□ -0.07
SDC1P18827 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
SDC1P18827 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC14.64□□□□□ -0.07
SDC1P18827 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
SDC1P18827 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
SDC1P18827 KIAA1191-201ENST00000298569 2991 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
SDC1P18827 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC14.64□□□□□ -0.07
SDC1P18827 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC14.64□□□□□ -0.07
SDC1P18827 AC009477.1-201ENST00000452936 217 ntBASIC14.64□□□□□ -0.07
SDC1P18827 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
SDC1P18827 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC14.64□□□□□ -0.07
SDC1P18827 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
SDC1P18827 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC14.64□□□□□ -0.07
SDC1P18827 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC14.64□□□□□ -0.07
SDC1P18827 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC14.64□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms