Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 EIF4A1-236ENST00000584901 1021 ntTSL 216.25■□□□□ 0.195e-10■□□□□ 9.9
YBX3P16989 EIF4A1-229ENST00000583802 563 ntTSL 413.21□□□□□ -0.295e-10■□□□□ 9.9
YBX3P16989 EIF4A1-217ENST00000581384 642 ntTSL 512.02□□□□□ -0.495e-10■□□□□ 9.9
YBX3P16989 EIF4A1-237ENST00000585024 577 ntTSL 411.97□□□□□ -0.495e-10■□□□□ 9.9
YBX3P16989 PRKCB-205ENST00000472066 556 ntTSL 315.51■□□□□ 0.073e-9■□□□□ 9.9
YBX3P16989 DHCR24-202ENST00000436604 863 ntTSL 313.91□□□□□ -0.182e-8■□□□□ 9.9
YBX3P16989 EEF2-207ENST00000600794 352 ntTSL 312.49□□□□□ -0.412e-65■□□□□ 9.9
YBX3P16989 SLC6A8-208ENST00000467402 308 ntTSL 516.31■□□□□ 0.25e-11■□□□□ 9.9
YBX3P16989 GPX4-211ENST00000614791 431 ntTSL 332.22■■■□□ 2.751e-7■□□□□ 9.9
YBX3P16989 GPBP1L1-207ENST00000480083 964 ntTSL 228.17■■■□□ 2.13e-11■□□□□ 9.9
YBX3P16989 CTSH-214ENST00000534038 593 ntTSL 425.11■■□□□ 1.611e-7■□□□□ 9.9
YBX3P16989 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC23.63■■□□□ 1.371e-7■□□□□ 9.9
YBX3P16989 CTSH-210ENST00000529861 857 ntTSL 323.55■■□□□ 1.361e-7■□□□□ 9.9
YBX3P16989 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.31e-7■□□□□ 9.9
YBX3P16989 FANCI-209ENST00000565255 754 ntTSL 323.02■■□□□ 1.281e-7■□□□□ 9.9
YBX3P16989 GPBP1L1-210ENST00000488278 995 ntTSL 222.03■■□□□ 1.123e-11■□□□□ 9.9
YBX3P16989 ABCA2-206ENST00000431584 886 ntTSL 521.28■■□□□ 11e-7■□□□□ 9.9
YBX3P16989 ABCA2-217ENST00000479446 6295 ntTSL 1 (best)20.02■□□□□ 0.81e-7■□□□□ 9.9
YBX3P16989 CTSH-218ENST00000615999 972 ntTSL 1 (best) BASIC17.83■□□□□ 0.441e-7■□□□□ 9.9
YBX3P16989 CTSH-207ENST00000528741 719 ntTSL 517.66■□□□□ 0.421e-7■□□□□ 9.9
YBX3P16989 CTSH-209ENST00000529612 574 ntTSL 417.66■□□□□ 0.421e-7■□□□□ 9.9
YBX3P16989 TROVE2-209ENST00000460715 1474 ntTSL 317.47■□□□□ 0.391e-7■□□□□ 9.9
YBX3P16989 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.282e-6■□□□□ 9.9
YBX3P16989 VAPB-202ENST00000395802 1834 ntTSL 1 (best) BASIC16.22■□□□□ 0.191e-7■□□□□ 9.9
YBX3P16989 CTSH-208ENST00000529263 770 ntTSL 514.57□□□□□ -0.081e-7■□□□□ 9.9
YBX3P16989 VAPB-203ENST00000463370 2393 ntTSL 214.2□□□□□ -0.141e-7■□□□□ 9.9
YBX3P16989 CTSH-217ENST00000534533 836 ntTSL 314□□□□□ -0.171e-7■□□□□ 9.9
YBX3P16989 NAA15-201ENST00000296543 6222 ntAPPRIS P2 TSL 1 (best) BASIC13.74□□□□□ -0.211e-7■□□□□ 9.9
YBX3P16989 NAA15-202ENST00000398947 6072 ntAPPRIS ALT1 TSL 5 BASIC12.99□□□□□ -0.331e-7■□□□□ 9.9
YBX3P16989 CST3-203ENST00000398411 3286 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.341e-7■□□□□ 9.9
YBX3P16989 CTSH-205ENST00000528191 569 ntTSL 412.56□□□□□ -0.41e-7■□□□□ 9.9
YBX3P16989 VAPB-204ENST00000475243 7936 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.611e-7■□□□□ 9.9
YBX3P16989 VAPB-201ENST00000265619 3596 ntTSL 28.97□□□□□ -0.971e-7■□□□□ 9.9
YBX3P16989 GPBP1L1-208ENST00000480941 850 ntTSL 28.66□□□□□ -1.023e-11■□□□□ 9.9
YBX3P16989 VAPB-205ENST00000476395 3583 ntTSL 28.46□□□□□ -1.061e-7■□□□□ 9.9
YBX3P16989 TROVE2-205ENST00000367446 3081 ntAPPRIS P3 TSL 1 (best) BASIC8.32□□□□□ -1.081e-7■□□□□ 9.9
YBX3P16989 NAA15-208ENST00000515576 2456 ntTSL 2 BASIC7.39□□□□□ -1.231e-7■□□□□ 9.9
YBX3P16989 FANCI-205ENST00000563250 700 ntTSL 55.47□□□□□ -1.531e-7■□□□□ 9.9
YBX3P16989 AL365205.1-201ENST00000456057 3947 ntTSL 216.64■□□□□ 0.252e-12■□□□□ 9.9
YBX3P16989 AL365205.1-203ENST00000335515 2871 ntTSL 213.95□□□□□ -0.182e-12■□□□□ 9.9
YBX3P16989 AL365205.1-202ENST00000487182 3043 ntTSL 213.09□□□□□ -0.312e-12■□□□□ 9.9
YBX3P16989 TOMM6-201ENST00000398881 595 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.352e-12■□□□□ 9.9
YBX3P16989 TOMM6-202ENST00000398884 637 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.782e-12■□□□□ 9.9
YBX3P16989 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC25.15■■□□□ 1.624e-17■□□□□ 9.9
YBX3P16989 HDDC2-205ENST00000608456 624 ntTSL 36.61□□□□□ -1.356e-19■□□□□ 9.9
YBX3P16989 ARPC3-205ENST00000475777 837 ntTSL 211.39□□□□□ -0.591e-15■□□□□ 9.9
YBX3P16989 ARPC3-204ENST00000471641 555 ntTSL 39.58□□□□□ -0.881e-15■□□□□ 9.9
YBX3P16989 TMOD1-201ENST00000259365 3343 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.227e-7■□□□□ 9.9
YBX3P16989 TMOD1-203ENST00000395211 3259 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.897e-7■□□□□ 9.9
YBX3P16989 COPA-207ENST00000545284 879 ntTSL 210.67□□□□□ -0.78e-14■□□□□ 9.9
YBX3P16989 SEC61B-202ENST00000481573 687 ntTSL 216.33■□□□□ 0.22e-16■□□□□ 9.9
YBX3P16989 USP48-213ENST00000529637 3228 ntTSL 1 (best) BASIC14.27□□□□□ -0.134e-7■□□□□ 9.9
YBX3P16989 SLC7A8-201ENST00000316902 4216 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.564e-7■□□□□ 9.9
YBX3P16989 SLC7A8-204ENST00000422941 3018 ntTSL 2 BASIC11.47□□□□□ -0.574e-7■□□□□ 9.9
YBX3P16989 SLC7A8-206ENST00000469263 3557 ntTSL 1 (best) BASIC10.04□□□□□ -0.84e-7■□□□□ 9.9
YBX3P16989 SLC7A8-202ENST00000339733 3066 ntTSL 1 (best)8.89□□□□□ -0.994e-7■□□□□ 9.9
YBX3P16989 PEG10-204ENST00000493935 763 ntTSL 415.92■□□□□ 0.148e-11■□□□□ 9.9
YBX3P16989 PEG10-208ENST00000615790 6394 ntTSL 1 (best) BASIC9.64□□□□□ -0.878e-11■□□□□ 9.9
YBX3P16989 PEG10-209ENST00000617526 6392 ntAPPRIS ALT2 TSL 5 BASIC9.06□□□□□ -0.968e-11■□□□□ 9.9
YBX3P16989 PEG10-206ENST00000612941 6392 ntAPPRIS ALT2 TSL 5 BASIC9.06□□□□□ -0.968e-11■□□□□ 9.9
YBX3P16989 PEG10-202ENST00000482108 6618 ntTSL 1 (best) BASIC8.46□□□□□ -1.058e-11■□□□□ 9.9
YBX3P16989 PEG10-201ENST00000465184 788 ntTSL 35.75□□□□□ -1.498e-11■□□□□ 9.9
YBX3P16989 SET-208ENST00000477806 957 ntTSL 1 (best)15.79■□□□□ 0.121e-31■□□□□ 9.9
YBX3P16989 SET-202ENST00000372686 1029 ntTSL 26.88□□□□□ -1.311e-31■□□□□ 9.9
YBX3P16989 SET-203ENST00000372688 801 ntTSL 2 BASIC5.88□□□□□ -1.471e-31■□□□□ 9.9
YBX3P16989 XPO6-213ENST00000568065 942 ntTSL 524.9■■□□□ 1.587e-7■□□□□ 9.9
YBX3P16989 ZNHIT1-202ENST00000461205 571 ntTSL 311.42□□□□□ -0.585e-10■□□□□ 9.9
YBX3P16989 PPP2R5C-209ENST00000553890 492 ntTSL 314.95□□□□□ -0.021e-11■□□□□ 9.9
YBX3P16989 PPP2R5C-212ENST00000554442 800 ntTSL 1 (best) BASIC13.33□□□□□ -0.281e-11■□□□□ 9.9
YBX3P16989 PPP2R5C-213ENST00000554504 448 ntTSL 37.94□□□□□ -1.141e-11■□□□□ 9.9
YBX3P16989 PPP2R5C-215ENST00000556068 3363 ntTSL 27.7□□□□□ -1.181e-11■□□□□ 9.9
YBX3P16989 RPL4-211ENST00000566491 593 ntTSL 215.48■□□□□ 0.071e-56■□□□□ 9.9
YBX3P16989 MARF1-205ENST00000548025 5891 ntAPPRIS ALT1 TSL 1 (best) BASIC11.06□□□□□ -0.641e-6■□□□□ 9.9
YBX3P16989 MARF1-214ENST00000552553 5053 ntTSL 510.14□□□□□ -0.791e-6■□□□□ 9.9
YBX3P16989 MARF1-202ENST00000540441 7105 ntTSL 5 BASIC9.62□□□□□ -0.871e-6■□□□□ 9.9
YBX3P16989 MARF1-211ENST00000551742 5900 ntAPPRIS ALT1 TSL 1 (best) BASIC9.22□□□□□ -0.931e-6■□□□□ 9.9
YBX3P16989 MARF1-201ENST00000396368 7743 ntAPPRIS P3 TSL 1 (best) BASIC8.27□□□□□ -1.091e-6■□□□□ 9.9
YBX3P16989 COPG1-209ENST00000514478 734 ntTSL 310.8□□□□□ -0.686e-7■□□□□ 9.9
YBX3P16989 COA1-202ENST00000310564 1085 ntAPPRIS P3 TSL 2 BASIC12.53□□□□□ -0.42e-7■□□□□ 9.9
YBX3P16989 COA1-204ENST00000415076 1737 ntTSL 311.18□□□□□ -0.622e-7■□□□□ 9.9
YBX3P16989 COA1-219ENST00000490251 2135 ntTSL 210.08□□□□□ -0.82e-7■□□□□ 9.9
YBX3P16989 COA1-209ENST00000438444 3223 ntTSL 29.99□□□□□ -0.812e-7■□□□□ 9.9
YBX3P16989 COA1-210ENST00000446330 1520 ntTSL 29.52□□□□□ -0.882e-7■□□□□ 9.9
YBX3P16989 COA1-203ENST00000395879 2448 ntAPPRIS P3 TSL 1 (best) BASIC9.01□□□□□ -0.972e-7■□□□□ 9.9
YBX3P16989 COA1-211ENST00000446564 1177 ntTSL 28.95□□□□□ -0.982e-7■□□□□ 9.9
YBX3P16989 COA1-201ENST00000223336 927 ntAPPRIS P3 TSL 2 BASIC8.19□□□□□ -1.12e-7■□□□□ 9.9
YBX3P16989 DENND5A-211ENST00000530780 611 ntTSL 325.26■■□□□ 1.635e-9■□□□□ 9.9
YBX3P16989 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.175e-9■□□□□ 9.9
YBX3P16989 DENND5A-205ENST00000526707 2861 ntTSL 219.18■□□□□ 0.665e-9■□□□□ 9.9
YBX3P16989 DENND5A-210ENST00000530044 4060 ntTSL 2 BASIC11.9□□□□□ -0.55e-9■□□□□ 9.9
YBX3P16989 DENND5A-215ENST00000532696 832 ntTSL 29.11□□□□□ -0.955e-9■□□□□ 9.9
YBX3P16989 EMC1-208ENST00000480380 3892 ntTSL 28.18□□□□□ -1.11e-8■□□□□ 9.9
YBX3P16989 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC16.73■□□□□ 0.272e-7■□□□□ 9.9
YBX3P16989 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC15.91■□□□□ 0.142e-7■□□□□ 9.9
YBX3P16989 MBNL1-205ENST00000355460 5941 ntAPPRIS ALT1 TSL 1 (best) BASIC14.42□□□□□ -0.12e-7■□□□□ 9.9
YBX3P16989 MBNL1-208ENST00000460166 552 ntTSL 411.83□□□□□ -0.522e-7■□□□□ 9.9
YBX3P16989 MBNL1-212ENST00000464596 989 ntTSL 511.49□□□□□ -0.572e-7■□□□□ 9.9
YBX3P16989 MBNL1-216ENST00000478535 1451 ntTSL 1 (best)9.61□□□□□ -0.872e-7■□□□□ 9.9
YBX3P16989 MBNL1-217ENST00000485509 1023 ntTSL 1 (best) BASIC9.27□□□□□ -0.932e-7■□□□□ 9.9
YBX3P16989 MBNL1-219ENST00000492948 1054 ntTSL 1 (best) BASIC9.1□□□□□ -0.952e-7■□□□□ 9.9
Retrieved 100 of 29,075 protein–RNA pairs in 167.9 ms