RNA–Protein interactions for RNA: ENST00000476395.1

VAPB-205, Transcript of VAMP associated protein B and C, humanhuman

TSL 2

Gene VAPB, Length 3,583 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPB-205ENST00000476395 NISCHQ9Y2I1 1504 aa17.29■□□□□ 0.36
VAPB-205ENST00000476395 ZCCHC6Q5VYS8 1495 aaKnown RBP14.7□□□□□ -0.06
VAPB-205ENST00000476395 CCDC180Q9P1Z9 1646 aa14.69□□□□□ -0.06
VAPB-205ENST00000476395 SHROOM4Q9ULL8 1493 aa14.67□□□□□ -0.06
VAPB-205ENST00000476395 MYO15BQ96JP2 1530 aa14.37□□□□□ -0.11
VAPB-205ENST00000476395 SUPT5HO00267 1087 aaKnown RBP14.34□□□□□ -0.11
VAPB-205ENST00000476395 DCAF1Q9Y4B6 1507 aa14.21□□□□□ -0.13
VAPB-205ENST00000476395 CHIC1Q5VXU3 224 aa14.16□□□□□ -0.14
VAPB-205ENST00000476395 HRCP23327 699 aa14.14□□□□□ -0.15
VAPB-205ENST00000476395 PPARGC1BQ86YN6 1023 aaKnown RBP14.14□□□□□ -0.15
VAPB-205ENST00000476395 PCGF6Q9BYE7 350 aa13.92□□□□□ -0.18
VAPB-205ENST00000476395 ABCC9O60706 1549 aa13.92□□□□□ -0.18
VAPB-205ENST00000476395 DCAF8L2P0C7V8 631 aa13.91□□□□□ -0.18
VAPB-205ENST00000476395 PELP1Q8IZL8 1130 aaKnown RBP13.76□□□□□ -0.21
VAPB-205ENST00000476395 MYT1Q01538 1121 aa13.75□□□□□ -0.21
VAPB-205ENST00000476395 LOC105371045A0A1W2PR82 267 aa13.74□□□□□ -0.21
VAPB-205ENST00000476395 SCRIBQ14160 1630 aa13.74□□□□□ -0.21
VAPB-205ENST00000476395 RSF1Q96T23 1441 aaPredicted RBP13.72□□□□□ -0.21
VAPB-205ENST00000476395 RB1CC1Q8TDY2 1594 aa13.68□□□□□ -0.22
VAPB-205ENST00000476395 SCAF1Q9H7N4 1312 aaKnown RBP13.62□□□□□ -0.23
VAPB-205ENST00000476395 SLC24A1O60721 1099 aa13.58□□□□□ -0.24
VAPB-205ENST00000476395 CECR2Q9BXF3 1484 aa13.52□□□□□ -0.24
VAPB-205ENST00000476395 MROH2BQ7Z745 1585 aa13.49□□□□□ -0.25
VAPB-205ENST00000476395 EIF4G1Q04637 1599 aaKnown RBP13.49□□□□□ -0.25
VAPB-205ENST00000476395 WIZO95785 1651 aa13.46□□□□□ -0.25
VAPB-205ENST00000476395 NACADO15069 1562 aa13.45□□□□□ -0.26
VAPB-205ENST00000476395 TRIM26Q12899 539 aaPredicted RBP13.42□□□□□ -0.26
VAPB-205ENST00000476395 BAZ1AQ9NRL2 1556 aaPredicted RBP13.36□□□□□ -0.27
VAPB-205ENST00000476395 TRIM41Q8WV44 630 aa13.32□□□□□ -0.28
VAPB-205ENST00000476395 TTBK1Q5TCY1 1321 aaPredicted RBP13.31□□□□□ -0.28
VAPB-205ENST00000476395 AEBP2Q6ZN18 517 aaPredicted RBP13.29□□□□□ -0.28
VAPB-205ENST00000476395 UNC13AQ9UPW8 1703 aa13.29□□□□□ -0.28
VAPB-205ENST00000476395 FAM9AQ8IZU1 332 aaPredicted RBP13.23□□□□□ -0.29
VAPB-205ENST00000476395 NEUROD1Q13562 356 aa13.18□□□□□ -0.3
VAPB-205ENST00000476395 SMARCA4P51532 1647 aa13.18□□□□□ -0.3
VAPB-205ENST00000476395 TOP2AP11388 1531 aaKnown RBP13.17□□□□□ -0.3
VAPB-205ENST00000476395 SMARCA2P51531 1590 aa13.17□□□□□ -0.3
VAPB-205ENST00000476395 ABCC8Q09428 1581 aa13.16□□□□□ -0.3
VAPB-205ENST00000476395 CCDC88BA6NC98 1476 aa13.12□□□□□ -0.31
VAPB-205ENST00000476395 PRKCSHP14314 528 aaPredicted RBP13.11□□□□□ -0.31
VAPB-205ENST00000476395 EHMT2Q96KQ7 1210 aa13.1□□□□□ -0.31
VAPB-205ENST00000476395 ACIN1Q9UKV3 1341 aaKnown RBP13.1□□□□□ -0.31
VAPB-205ENST00000476395 GTF3C3Q9Y5Q9 886 aa13.1□□□□□ -0.31
VAPB-205ENST00000476395 ZEB1P37275 1124 aaPredicted RBP13.05□□□□□ -0.32
VAPB-205ENST00000476395 BICRAQ9NZM4 1560 aa13.04□□□□□ -0.32
VAPB-205ENST00000476395 WRNQ14191 1432 aaPredicted RBP eCLIP13.02□□□□□ -0.32
VAPB-205ENST00000476395 RUSC2Q8N2Y8 1516 aa13.02□□□□□ -0.33
VAPB-205ENST00000476395 SOGA1O94964 1423 aa13.02□□□□□ -0.33
VAPB-205ENST00000476395 PABPN1Q86U42 306 aaKnown RBP eCLIP13.01□□□□□ -0.33
VAPB-205ENST00000476395 ERICH6Q7L0X2 663 aa13.01□□□□□ -0.33
VAPB-205ENST00000476395 PEG3Q9GZU2 1588 aa12.97□□□□□ -0.33
VAPB-205ENST00000476395 CEP162Q5TB80 1403 aa12.94□□□□□ -0.34
VAPB-205ENST00000476395 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.9□□□□□ -0.34
VAPB-205ENST00000476395 SYNJ1O43426 1573 aa12.9□□□□□ -0.34
VAPB-205ENST00000476395 TNIKQ9UKE5 1360 aa12.89□□□□□ -0.35
VAPB-205ENST00000476395 KIF21BO75037 1637 aa12.82□□□□□ -0.36
VAPB-205ENST00000476395 EEA1Q15075 1411 aa12.81□□□□□ -0.36
VAPB-205ENST00000476395 YTHDC1Q96MU7 727 aaKnown RBP12.81□□□□□ -0.36
VAPB-205ENST00000476395 DIEXFQ68CQ4 756 aaKnown RBP12.8□□□□□ -0.36
VAPB-205ENST00000476395 CENPBP07199 599 aaPredicted RBP12.78□□□□□ -0.36
VAPB-205ENST00000476395 GOLGA3Q08378 1498 aa12.78□□□□□ -0.36
VAPB-205ENST00000476395 APLP2Q06481 763 aa12.78□□□□□ -0.36
VAPB-205ENST00000476395 CSRNP3Q8WYN3 585 aa12.77□□□□□ -0.36
VAPB-205ENST00000476395 ATAD2BQ9ULI0 1458 aa12.75□□□□□ -0.37
VAPB-205ENST00000476395 CCER1Q8TC90 406 aaPredicted RBP12.73□□□□□ -0.37
VAPB-205ENST00000476395 DAXXQ9UER7 740 aaPredicted RBP12.69□□□□□ -0.38
VAPB-205ENST00000476395 CEP164Q9UPV0 1460 aa12.69□□□□□ -0.38
VAPB-205ENST00000476395 RAPGEF2Q9Y4G8 1499 aa12.69□□□□□ -0.38
VAPB-205ENST00000476395 BIVM-ERCC5R4GMW8 1640 aa12.69□□□□□ -0.38
VAPB-205ENST00000476395 TOP2BQ02880 1626 aa12.68□□□□□ -0.38
VAPB-205ENST00000476395 CLIP1P30622 1438 aa12.66□□□□□ -0.38
VAPB-205ENST00000476395 BAZ1BQ9UIG0 1483 aaKnown RBP12.65□□□□□ -0.38
VAPB-205ENST00000476395 VPS8Q8N3P4 1428 aa12.63□□□□□ -0.39
VAPB-205ENST00000476395 BCL11AQ9H165 835 aa12.61□□□□□ -0.39
VAPB-205ENST00000476395 UBTFP17480 764 aaKnown RBP12.6□□□□□ -0.39
VAPB-205ENST00000476395 ARAP1Q96P48 1450 aa12.57□□□□□ -0.4
VAPB-205ENST00000476395 PRXQ9BXM0 1461 aa12.57□□□□□ -0.4
VAPB-205ENST00000476395 CUX1P39880 1505 aa12.55□□□□□ -0.4
VAPB-205ENST00000476395 ERICH3Q5RHP9 1530 aa12.55□□□□□ -0.4
VAPB-205ENST00000476395 MIER1Q8N108 512 aa12.53□□□□□ -0.4
VAPB-205ENST00000476395 ZNF316A6NFI3 1004 aaPredicted RBP12.51□□□□□ -0.41
VAPB-205ENST00000476395 HMGXB3Q12766 1538 aa12.51□□□□□ -0.41
VAPB-205ENST00000476395 HNRNPUL2Q1KMD3 747 aaKnown RBP12.46□□□□□ -0.41
VAPB-205ENST00000476395 PRDM2Q13029 1718 aa12.46□□□□□ -0.41
VAPB-205ENST00000476395 NCAPD3P42695 1498 aa12.46□□□□□ -0.41
VAPB-205ENST00000476395 DHX57Q6P158 1386 aaKnown RBP12.43□□□□□ -0.42
VAPB-205ENST00000476395 KANK4Q5T7N3 995 aaPredicted RBP12.43□□□□□ -0.42
VAPB-205ENST00000476395 CUX2O14529 1486 aa12.42□□□□□ -0.42
VAPB-205ENST00000476395 CFTRP13569 1480 aa12.42□□□□□ -0.42
VAPB-205ENST00000476395 RRBP1Q9P2E9 1410 aaKnown RBP12.42□□□□□ -0.42
VAPB-205ENST00000476395 ARHGAP35Q9NRY4 1499 aa12.41□□□□□ -0.42
VAPB-205ENST00000476395 ANP32EQ9BTT0 268 aa12.41□□□□□ -0.42
VAPB-205ENST00000476395 TSHZ2Q9NRE2 1034 aa12.38□□□□□ -0.43
VAPB-205ENST00000476395 SUPT16HQ9Y5B9 1047 aaKnown RBP12.37□□□□□ -0.43
VAPB-205ENST00000476395 CC2D2AQ9P2K1 1620 aa12.34□□□□□ -0.43
VAPB-205ENST00000476395 RANGAP1P46060 587 aaPredicted RBP12.34□□□□□ -0.43
VAPB-205ENST00000476395 MAPKBP1O60336 1514 aa12.33□□□□□ -0.44
VAPB-205ENST00000476395 KIF27Q86VH2 1401 aa12.31□□□□□ -0.44
VAPB-205ENST00000476395 EIF5BO60841 1220 aaKnown RBP12.31□□□□□ -0.44
VAPB-205ENST00000476395 DNAJC5BQ9UF47 199 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms