RNA–Protein interactions for RNA: ENST00000475243.5

VAPB-204, Transcript of VAMP associated protein B and C, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VAPB, Length 7,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPB-204ENST00000475243 DCAF8L2P0C7V8 631 aa19.23■□□□□ 0.67
VAPB-204ENST00000475243 SUPT5HO00267 1087 aaKnown RBP18.11■□□□□ 0.49
VAPB-204ENST00000475243 EHMT2Q96KQ7 1210 aa17.93■□□□□ 0.46
VAPB-204ENST00000475243 SHROOM4Q9ULL8 1493 aa17.77■□□□□ 0.44
VAPB-204ENST00000475243 NISCHQ9Y2I1 1504 aa17.39■□□□□ 0.38
VAPB-204ENST00000475243 TTBK1Q5TCY1 1321 aaPredicted RBP17.28■□□□□ 0.36
VAPB-204ENST00000475243 PELP1Q8IZL8 1130 aaKnown RBP17.27■□□□□ 0.35
VAPB-204ENST00000475243 APLP2Q06481 763 aa17.26■□□□□ 0.35
VAPB-204ENST00000475243 FAM9AQ8IZU1 332 aaPredicted RBP17.2■□□□□ 0.34
VAPB-204ENST00000475243 RANGAP1P46060 587 aaPredicted RBP17.06■□□□□ 0.32
VAPB-204ENST00000475243 PCGF6Q9BYE7 350 aa16.97■□□□□ 0.31
VAPB-204ENST00000475243 ATP1B4Q9UN42 357 aaPredicted RBP16.9■□□□□ 0.3
VAPB-204ENST00000475243 ERICH6Q7L0X2 663 aa16.75■□□□□ 0.27
VAPB-204ENST00000475243 CCER1Q8TC90 406 aaPredicted RBP16.71■□□□□ 0.27
VAPB-204ENST00000475243 TRIM41Q8WV44 630 aa16.64■□□□□ 0.25
VAPB-204ENST00000475243 CENPBP07199 599 aaPredicted RBP16.6■□□□□ 0.25
VAPB-204ENST00000475243 UBTFP17480 764 aaKnown RBP16.6■□□□□ 0.25
VAPB-204ENST00000475243 YTHDC1Q96MU7 727 aaKnown RBP16.52■□□□□ 0.24
VAPB-204ENST00000475243 PPARGC1BQ86YN6 1023 aaKnown RBP16.52■□□□□ 0.24
VAPB-204ENST00000475243 ZEB1P37275 1124 aaPredicted RBP16.45■□□□□ 0.22
VAPB-204ENST00000475243 NEFLP07196 543 aa16.38■□□□□ 0.21
VAPB-204ENST00000475243 MYT1LQ9UL68 1186 aa16.28■□□□□ 0.2
VAPB-204ENST00000475243 POLR3GLQ9BT43 218 aa16.25■□□□□ 0.19
VAPB-204ENST00000475243 ITGAEP38570 1179 aa16.25■□□□□ 0.19
VAPB-204ENST00000475243 CNGB1Q14028 1251 aaPredicted RBP16.21■□□□□ 0.18
VAPB-204ENST00000475243 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.19■□□□□ 0.18
VAPB-204ENST00000475243 HNRNPUL2Q1KMD3 747 aaKnown RBP16.19■□□□□ 0.18
VAPB-204ENST00000475243 CHIC1Q5VXU3 224 aa16.15■□□□□ 0.18
VAPB-204ENST00000475243 MYT1Q01538 1121 aa16.08■□□□□ 0.16
VAPB-204ENST00000475243 DAXXQ9UER7 740 aaPredicted RBP16.04■□□□□ 0.16
VAPB-204ENST00000475243 TRIM26Q12899 539 aaPredicted RBP16.02■□□□□ 0.15
VAPB-204ENST00000475243 SLC4A1APQ9BWU0 796 aaKnown RBP16■□□□□ 0.15
VAPB-204ENST00000475243 LOC105371045A0A1W2PR82 267 aa15.99■□□□□ 0.15
VAPB-204ENST00000475243 HRCP23327 699 aa15.89■□□□□ 0.13
VAPB-204ENST00000475243 CLSPNQ9HAW4 1339 aa15.73■□□□□ 0.11
VAPB-204ENST00000475243 FAM50AQ14320 339 aaKnown RBP15.71■□□□□ 0.11
VAPB-204ENST00000475243 ZNF316A6NFI3 1004 aaPredicted RBP15.65■□□□□ 0.1
VAPB-204ENST00000475243 TRIM52Q96A61 297 aa15.64■□□□□ 0.09
VAPB-204ENST00000475243 NEUROD1Q13562 356 aa15.64■□□□□ 0.09
VAPB-204ENST00000475243 DIEXFQ68CQ4 756 aaKnown RBP15.62■□□□□ 0.09
VAPB-204ENST00000475243 BCL11AQ9H165 835 aa15.56■□□□□ 0.08
VAPB-204ENST00000475243 ZNF326Q5BKZ1 582 aaKnown RBP15.55■□□□□ 0.08
VAPB-204ENST00000475243 PABPN1Q86U42 306 aaKnown RBP eCLIP15.55■□□□□ 0.08
VAPB-204ENST00000475243 RTL5Q5HYW3 569 aaPredicted RBP15.54■□□□□ 0.08
VAPB-204ENST00000475243 BCANQ96GW7 911 aa15.53■□□□□ 0.08
VAPB-204ENST00000475243 SLC24A1O60721 1099 aa15.52■□□□□ 0.07
VAPB-204ENST00000475243 FBLN2P98095 1184 aa15.48■□□□□ 0.07
VAPB-204ENST00000475243 ARID3CA6NKF2 412 aa15.39■□□□□ 0.05
VAPB-204ENST00000475243 ABCC9O60706 1549 aa15.38■□□□□ 0.05
VAPB-204ENST00000475243 ZBTB47Q9UFB7 747 aaPredicted RBP15.37■□□□□ 0.05
VAPB-204ENST00000475243 ANP32CO43423 234 aa15.36■□□□□ 0.05
VAPB-204ENST00000475243 P3H3Q8IVL6 736 aa15.33■□□□□ 0.04
VAPB-204ENST00000475243 GTF3C3Q9Y5Q9 886 aa15.31■□□□□ 0.04
VAPB-204ENST00000475243 CANXP27824 592 aaKnown RBP15.31■□□□□ 0.04
VAPB-204ENST00000475243 CDK11AQ9UQ88 783 aaPredicted RBP15.28■□□□□ 0.04
VAPB-204ENST00000475243 PLPPR3Q6T4P5 718 aa15.21■□□□□ 0.03
VAPB-204ENST00000475243 ZNF777Q9ULD5 760 aaPredicted RBP15.21■□□□□ 0.03
VAPB-204ENST00000475243 NEFMP07197 916 aa15.19■□□□□ 0.02
VAPB-204ENST00000475243 NPM2Q86SE8 214 aaKnown RBP15.13■□□□□ 0.01
VAPB-204ENST00000475243 CHGAP10645 457 aaKnown RBP15.08■□□□□ 0.01
VAPB-204ENST00000475243 SALL2Q9Y467 1007 aaPredicted RBP15.04■□□□□ -0
VAPB-204ENST00000475243 ESF1Q9H501 851 aaKnown RBP15.03■□□□□ -0
VAPB-204ENST00000475243 STAG3Q9UJ98 1225 aa15.03■□□□□ -0
VAPB-204ENST00000475243 ANP32AP39687 249 aaKnown RBP15.02■□□□□ -0
VAPB-204ENST00000475243 HSP90AA1P07900 732 aaKnown RBP14.96□□□□□ -0.02
VAPB-204ENST00000475243 FAM9BQ8IZU0 186 aa14.95□□□□□ -0.02
VAPB-204ENST00000475243 CSRNP3Q8WYN3 585 aa14.95□□□□□ -0.02
VAPB-204ENST00000475243 FKBP8Q14318 412 aa14.94□□□□□ -0.02
VAPB-204ENST00000475243 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.93□□□□□ -0.022e-8■□□□□ 8.9
VAPB-204ENST00000475243 ACIN1Q9UKV3 1341 aaKnown RBP14.92□□□□□ -0.02
VAPB-204ENST00000475243 SENP3Q9H4L4 574 aaPredicted RBP14.91□□□□□ -0.02
VAPB-204ENST00000475243 HNRNPUQ00839 825 aaKnown RBP eCLIP14.9□□□□□ -0.02
VAPB-204ENST00000475243 DDX10Q13206 875 aaKnown RBP14.9□□□□□ -0.02
VAPB-204ENST00000475243 TONSLQ96HA7 1378 aa14.89□□□□□ -0.03
VAPB-204ENST00000475243 CHIC2Q9UKJ5 165 aa14.89□□□□□ -0.03
VAPB-204ENST00000475243 SCAF1Q9H7N4 1312 aaKnown RBP14.86□□□□□ -0.03
VAPB-204ENST00000475243 PLEKHG5O94827 1062 aa14.86□□□□□ -0.03
VAPB-204ENST00000475243 EIF5BO60841 1220 aaKnown RBP14.86□□□□□ -0.03
VAPB-204ENST00000475243 KDM2AQ9Y2K7 1162 aa14.84□□□□□ -0.03
VAPB-204ENST00000475243 ANP32BQ92688 251 aaKnown RBP14.84□□□□□ -0.03
VAPB-204ENST00000475243 ARXQ96QS3 562 aa14.84□□□□□ -0.03
VAPB-204ENST00000475243 NPM1P06748 294 aaKnown RBP eCLIP14.83□□□□□ -0.04
VAPB-204ENST00000475243 SCRIBQ14160 1630 aa14.83□□□□□ -0.04
VAPB-204ENST00000475243 A0A0G2JS52 829 aa14.82□□□□□ -0.04
VAPB-204ENST00000475243 UPF2Q9HAU5 1272 aaKnown RBP14.82□□□□□ -0.04
VAPB-204ENST00000475243 TMC1Q8TDI8 760 aa14.81□□□□□ -0.04
VAPB-204ENST00000475243 NBR1Q14596 966 aa14.78□□□□□ -0.04
VAPB-204ENST00000475243 HIRIP3Q9BW71 556 aaPredicted RBP14.78□□□□□ -0.04
VAPB-204ENST00000475243 ZBTB7CA1YPR0 619 aa14.75□□□□□ -0.05
VAPB-204ENST00000475243 IRX6P78412 446 aaPredicted RBP14.74□□□□□ -0.05
VAPB-204ENST00000475243 CCDC136Q96JN2 1154 aa14.74□□□□□ -0.05
VAPB-204ENST00000475243 WDR43Q15061 677 aaKnown RBP eCLIP14.74□□□□□ -0.05
VAPB-204ENST00000475243 GOLGA6L2Q8N9W4 650 aaPredicted RBP14.69□□□□□ -0.06
VAPB-204ENST00000475243 SENP3-EIF4A1A0A087X0R7 540 aa14.68□□□□□ -0.06
VAPB-204ENST00000475243 C14orf37Q86TY3 774 aa14.68□□□□□ -0.06
VAPB-204ENST00000475243 MRS2Q9HD23 443 aa14.67□□□□□ -0.06
VAPB-204ENST00000475243 TSPY4P0CV99 314 aa14.65□□□□□ -0.06
VAPB-204ENST00000475243 TSPY10P0CW01 314 aa14.65□□□□□ -0.06
VAPB-204ENST00000475243 KCNH8Q96L42 1107 aa14.61□□□□□ -0.07
VAPB-204ENST00000475243 RRP7BPQ9NSQ0 103 aa14.61□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms