Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 PDE8A-203ENST00000394553 3912 ntAPPRIS P4 TSL 1 (best) BASIC13.17□□□□□ -0.3
SDCBPO00560 ABCG1-201ENST00000343687 3037 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
SDCBPO00560 NTNG1-208ENST00000370074 3048 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
SDCBPO00560 CACNA2D1-201ENST00000356253 3858 ntTSL 5 BASIC13.17□□□□□ -0.3
SDCBPO00560 CNNM2-203ENST00000433628 3857 ntAPPRIS ALT1 TSL 2 BASIC13.17□□□□□ -0.3
SDCBPO00560 CYP4F24P-201ENST00000586049 1580 ntBASIC13.17□□□□□ -0.3
SDCBPO00560 KRT8P37-201ENST00000451609 1420 ntBASIC13.17□□□□□ -0.3
SDCBPO00560 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC13.17□□□□□ -0.3
SDCBPO00560 RCSD1-202ENST00000367854 3135 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
SDCBPO00560 HIPK3-203ENST00000456517 7399 ntAPPRIS P1 TSL 2 BASIC13.17□□□□□ -0.3
SDCBPO00560 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
SDCBPO00560 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC13.17□□□□□ -0.3
SDCBPO00560 STOM-202ENST00000347359 870 ntTSL 2 BASIC13.17□□□□□ -0.3
SDCBPO00560 AC004461.1-201ENST00000412461 403 ntBASIC13.17□□□□□ -0.3
SDCBPO00560 AL627223.1-201ENST00000416693 442 ntBASIC13.17□□□□□ -0.3
SDCBPO00560 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC13.17□□□□□ -0.3
SDCBPO00560 ELP6-209ENST00000446787 894 ntTSL 3 BASIC13.17□□□□□ -0.3
SDCBPO00560 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
SDCBPO00560 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC13.17□□□□□ -0.3
SDCBPO00560 AC112482.1-201ENST00000492080 688 ntBASIC13.17□□□□□ -0.3
SDCBPO00560 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC13.17□□□□□ -0.3
SDCBPO00560 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC13.17□□□□□ -0.3
SDCBPO00560 AC092865.5-201ENST00000545435 363 ntBASIC13.17□□□□□ -0.3
SDCBPO00560 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC13.17□□□□□ -0.3
SDCBPO00560 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC13.17□□□□□ -0.3
SDCBPO00560 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC13.17□□□□□ -0.3
SDCBPO00560 AC004835.2-201ENST00000603762 682 ntBASIC13.17□□□□□ -0.3
SDCBPO00560 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC13.17□□□□□ -0.3
SDCBPO00560 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
SDCBPO00560 MPPED2-202ENST00000448418 5591 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
SDCBPO00560 COL6A2-201ENST00000300527 3461 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
SDCBPO00560 BAIAP3-202ENST00000397488 4583 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
SDCBPO00560 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC13.17□□□□□ -0.3
SDCBPO00560 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC13.17□□□□□ -0.3
SDCBPO00560 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
SDCBPO00560 PCDH17-201ENST00000377918 8232 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
SDCBPO00560 TJP2-208ENST00000535702 3984 ntAPPRIS ALT2 TSL 2 BASIC13.17□□□□□ -0.3
SDCBPO00560 EGFR-206ENST00000454757 5464 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
SDCBPO00560 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
SDCBPO00560 DCUN1D4-202ENST00000381441 4207 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
SDCBPO00560 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
SDCBPO00560 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
SDCBPO00560 CICP11-201ENST00000434745 2827 ntBASIC13.17□□□□□ -0.3
SDCBPO00560 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
SDCBPO00560 GPAT2-202ENST00000434632 3061 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
SDCBPO00560 RAF1-201ENST00000251849 3300 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
SDCBPO00560 LHX6-207ENST00000541397 2942 ntTSL 2 BASIC13.16□□□□□ -0.3
SDCBPO00560 MBD1-212ENST00000585672 2532 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
SDCBPO00560 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
SDCBPO00560 POU5F1-204ENST00000471529 1723 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
SDCBPO00560 TMPRSS6-204ENST00000406856 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
SDCBPO00560 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
SDCBPO00560 BAIAP3-216ENST00000628027 4732 ntTSL 5 BASIC13.16□□□□□ -0.3
SDCBPO00560 MGRN1-202ENST00000399577 6425 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
SDCBPO00560 TDRD12-202ENST00000444215 3934 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
SDCBPO00560 BTN1A1-201ENST00000244513 2895 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
SDCBPO00560 MTMR6-201ENST00000381801 5659 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
SDCBPO00560 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
SDCBPO00560 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC13.16□□□□□ -0.3
SDCBPO00560 CRLS1-201ENST00000378863 3958 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
SDCBPO00560 AMOTL2-201ENST00000249883 4488 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
SDCBPO00560 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
SDCBPO00560 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC13.16□□□□□ -0.3
SDCBPO00560 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
SDCBPO00560 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC13.16□□□□□ -0.3
SDCBPO00560 UPF3AP3-201ENST00000420996 769 ntBASIC13.16□□□□□ -0.3
SDCBPO00560 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
SDCBPO00560 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC13.16□□□□□ -0.3
SDCBPO00560 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC13.16□□□□□ -0.3
SDCBPO00560 CCDC74BP1-201ENST00000508880 1123 ntBASIC13.16□□□□□ -0.3
SDCBPO00560 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC13.16□□□□□ -0.3
SDCBPO00560 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC13.16□□□□□ -0.3
SDCBPO00560 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC13.16□□□□□ -0.3
SDCBPO00560 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
SDCBPO00560 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC13.16□□□□□ -0.3
SDCBPO00560 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC13.16□□□□□ -0.3
SDCBPO00560 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC13.16□□□□□ -0.3
SDCBPO00560 ERN2-202ENST00000457008 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
SDCBPO00560 CEP131-208ENST00000575907 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
SDCBPO00560 PRDM15-201ENST00000269844 4881 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
SDCBPO00560 LRP8-201ENST00000306052 7648 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
SDCBPO00560 ANKRD13B-201ENST00000394859 3214 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
SDCBPO00560 AP000550.1-201ENST00000420508 4833 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
SDCBPO00560 CHRNA7-201ENST00000306901 6181 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
SDCBPO00560 S1PR2-201ENST00000590320 3582 ntAPPRIS P1 TSL 3 BASIC13.16□□□□□ -0.3
SDCBPO00560 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC13.16□□□□□ -0.3
SDCBPO00560 RAB11FIP1-201ENST00000287263 6253 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
SDCBPO00560 UNC13A-202ENST00000519716 9838 ntAPPRIS P2 TSL 5 BASIC13.16□□□□□ -0.3
SDCBPO00560 NRDC-201ENST00000352171 3691 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
SDCBPO00560 GTF2I-212ENST00000573035 4548 ntAPPRIS P4 TSL 1 (best) BASIC13.16□□□□□ -0.3
SDCBPO00560 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
SDCBPO00560 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC13.16□□□□□ -0.3
SDCBPO00560 MYH7-201ENST00000355349 6087 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
SDCBPO00560 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC13.15□□□□□ -0.3
SDCBPO00560 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
SDCBPO00560 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
SDCBPO00560 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC13.15□□□□□ -0.3
SDCBPO00560 PDPK1-202ENST00000342085 7241 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
SDCBPO00560 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
SDCBPO00560 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms