Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 CENPM-206ENST00000407253 818 ntTSL 2 BASIC14.85□□□□□ -0.03
SLC28A1O00337 RAD18-204ENST00000418463 563 ntTSL 4 BASIC14.85□□□□□ -0.03
SLC28A1O00337 RAD18-205ENST00000421052 582 ntTSL 3 BASIC14.85□□□□□ -0.03
SLC28A1O00337 CNN2P2-201ENST00000443536 909 ntBASIC14.85□□□□□ -0.03
SLC28A1O00337 CNN2P3-201ENST00000450201 906 ntBASIC14.85□□□□□ -0.03
SLC28A1O00337 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC14.85□□□□□ -0.03
SLC28A1O00337 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC14.85□□□□□ -0.03
SLC28A1O00337 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC14.85□□□□□ -0.03
SLC28A1O00337 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC14.85□□□□□ -0.03
SLC28A1O00337 VPS29-207ENST00000549970 818 ntTSL 3 BASIC14.85□□□□□ -0.03
SLC28A1O00337 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC14.85□□□□□ -0.03
SLC28A1O00337 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC14.85□□□□□ -0.03
SLC28A1O00337 AC010336.2-201ENST00000564226 506 ntBASIC14.85□□□□□ -0.03
SLC28A1O00337 AC027612.4-201ENST00000605371 583 ntBASIC14.85□□□□□ -0.03
SLC28A1O00337 AL138828.2-201ENST00000615812 383 ntBASIC14.85□□□□□ -0.03
SLC28A1O00337 AL136317.3-201ENST00000618497 906 ntBASIC14.85□□□□□ -0.03
SLC28A1O00337 AC073592.8-201ENST00000624126 511 ntBASIC14.85□□□□□ -0.03
SLC28A1O00337 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC14.85□□□□□ -0.03
SLC28A1O00337 REXO1L4P-201ENST00000605109 1937 ntBASIC14.85□□□□□ -0.03
SLC28A1O00337 TMEM181-201ENST00000367090 5390 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SLC28A1O00337 SEMA4F-210ENST00000611975 6007 ntTSL 5 BASIC14.85□□□□□ -0.03
SLC28A1O00337 MAU2-201ENST00000262815 4994 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SLC28A1O00337 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SLC28A1O00337 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
SLC28A1O00337 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC14.85□□□□□ -0.03
SLC28A1O00337 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SLC28A1O00337 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
SLC28A1O00337 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SLC28A1O00337 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC14.85□□□□□ -0.03
SLC28A1O00337 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SLC28A1O00337 AC005089.1-201ENST00000619486 2241 ntBASIC14.85□□□□□ -0.03
SLC28A1O00337 FERMT1-201ENST00000217289 5151 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SLC28A1O00337 NYNRIN-201ENST00000382554 7857 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
SLC28A1O00337 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC14.85□□□□□ -0.03
SLC28A1O00337 ITSN2-203ENST00000406921 4563 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
SLC28A1O00337 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SLC28A1O00337 AC007686.3-201ENST00000619017 3487 ntBASIC14.85□□□□□ -0.03
SLC28A1O00337 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
SLC28A1O00337 SYNPO2L-202ENST00000394810 4921 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SLC28A1O00337 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SLC28A1O00337 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC14.84□□□□□ -0.03
SLC28A1O00337 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC14.84□□□□□ -0.03
SLC28A1O00337 KCNMA1-202ENST00000286628 6233 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
SLC28A1O00337 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
SLC28A1O00337 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC14.84□□□□□ -0.03
SLC28A1O00337 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SLC28A1O00337 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC14.84□□□□□ -0.03
SLC28A1O00337 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
SLC28A1O00337 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SLC28A1O00337 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
SLC28A1O00337 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
SLC28A1O00337 E2F3-201ENST00000346618 4749 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
SLC28A1O00337 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SLC28A1O00337 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC14.84□□□□□ -0.03
SLC28A1O00337 AC023908.3-201ENST00000564211 3047 ntBASIC14.84□□□□□ -0.03
SLC28A1O00337 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
SLC28A1O00337 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SLC28A1O00337 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC14.84□□□□□ -0.03
SLC28A1O00337 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
SLC28A1O00337 AC134684.3-201ENST00000641758 218 ntBASIC14.84□□□□□ -0.03
SLC28A1O00337 AL109936.8-201ENST00000641772 604 ntBASIC14.84□□□□□ -0.03
SLC28A1O00337 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SLC28A1O00337 PCDH17-201ENST00000377918 8232 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SLC28A1O00337 PCDHA9-202ENST00000532602 6293 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SLC28A1O00337 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
SLC28A1O00337 TUBB3P1-201ENST00000405796 1332 ntBASIC14.84□□□□□ -0.03
SLC28A1O00337 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
SLC28A1O00337 MAGI1-201ENST00000330909 7415 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
SLC28A1O00337 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
SLC28A1O00337 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SLC28A1O00337 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SLC28A1O00337 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SLC28A1O00337 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SLC28A1O00337 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
SLC28A1O00337 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SLC28A1O00337 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC14.83□□□□□ -0.03
SLC28A1O00337 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
SLC28A1O00337 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
SLC28A1O00337 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.03
SLC28A1O00337 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
SLC28A1O00337 MXD1-206ENST00000540449 5580 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
SLC28A1O00337 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
SLC28A1O00337 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
SLC28A1O00337 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC14.83□□□□□ -0.04
SLC28A1O00337 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC14.83□□□□□ -0.04
SLC28A1O00337 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SLC28A1O00337 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC14.83□□□□□ -0.04
SLC28A1O00337 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SLC28A1O00337 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC14.83□□□□□ -0.04
SLC28A1O00337 YTHDF3-216ENST00000623280 5193 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
SLC28A1O00337 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC14.83□□□□□ -0.04
SLC28A1O00337 LANCL2-201ENST00000254770 4353 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SLC28A1O00337 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC14.83□□□□□ -0.04
SLC28A1O00337 COCH-202ENST00000396618 2536 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SLC28A1O00337 MROH1-209ENST00000534366 5092 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
SLC28A1O00337 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
SLC28A1O00337 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SLC28A1O00337 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
SLC28A1O00337 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
SLC28A1O00337 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 67.3 ms