Protein–RNA interactions for Protein: Q9Y2D8

SSX2IP, Afadin- and alpha-actinin-binding protein, humanhuman

Predictions only

Length 614 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX2IPQ9Y2D8 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SSX2IPQ9Y2D8 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC16.62■□□□□ 0.25
SSX2IPQ9Y2D8 PLSCR4-204ENST00000446574 1442 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
SSX2IPQ9Y2D8 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC16.61■□□□□ 0.25
SSX2IPQ9Y2D8 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
SSX2IPQ9Y2D8 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC16.61■□□□□ 0.25
SSX2IPQ9Y2D8 PTPN9-206ENST00000618819 7813 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
SSX2IPQ9Y2D8 USE1-206ENST00000595101 1776 ntTSL 2 BASIC16.61■□□□□ 0.25
SSX2IPQ9Y2D8 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SSX2IPQ9Y2D8 IL17RA-201ENST00000319363 8607 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
SSX2IPQ9Y2D8 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SSX2IPQ9Y2D8 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SSX2IPQ9Y2D8 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC16.61■□□□□ 0.25
SSX2IPQ9Y2D8 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC16.61■□□□□ 0.25
SSX2IPQ9Y2D8 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SSX2IPQ9Y2D8 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SSX2IPQ9Y2D8 AKIP1-202ENST00000309357 1232 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
SSX2IPQ9Y2D8 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
SSX2IPQ9Y2D8 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC16.61■□□□□ 0.25
SSX2IPQ9Y2D8 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SSX2IPQ9Y2D8 DCTD-213ENST00000510370 794 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
SSX2IPQ9Y2D8 AC090099.4-201ENST00000527671 1027 ntTSL 5 BASIC16.61■□□□□ 0.25
SSX2IPQ9Y2D8 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
SSX2IPQ9Y2D8 AC023310.1-201ENST00000554836 735 ntBASIC16.61■□□□□ 0.25
SSX2IPQ9Y2D8 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC16.61■□□□□ 0.25
SSX2IPQ9Y2D8 IFT20-214ENST00000585089 1071 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SSX2IPQ9Y2D8 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC16.61■□□□□ 0.25
SSX2IPQ9Y2D8 AP005019.2-201ENST00000615104 511 ntBASIC16.61■□□□□ 0.25
SSX2IPQ9Y2D8 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC16.61■□□□□ 0.25
SSX2IPQ9Y2D8 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SSX2IPQ9Y2D8 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SSX2IPQ9Y2D8 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC16.61■□□□□ 0.25
SSX2IPQ9Y2D8 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SSX2IPQ9Y2D8 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC16.61■□□□□ 0.25
SSX2IPQ9Y2D8 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SSX2IPQ9Y2D8 ACP2-205ENST00000527256 1499 ntTSL 2 BASIC16.61■□□□□ 0.25
SSX2IPQ9Y2D8 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
SSX2IPQ9Y2D8 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SSX2IPQ9Y2D8 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC16.6■□□□□ 0.25
SSX2IPQ9Y2D8 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SSX2IPQ9Y2D8 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SSX2IPQ9Y2D8 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC16.6■□□□□ 0.25
SSX2IPQ9Y2D8 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SSX2IPQ9Y2D8 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
SSX2IPQ9Y2D8 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC16.6■□□□□ 0.25
SSX2IPQ9Y2D8 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
SSX2IPQ9Y2D8 NUP98-201ENST00000324932 6973 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SSX2IPQ9Y2D8 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SSX2IPQ9Y2D8 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
SSX2IPQ9Y2D8 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
SSX2IPQ9Y2D8 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
SSX2IPQ9Y2D8 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
SSX2IPQ9Y2D8 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
SSX2IPQ9Y2D8 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC16.6■□□□□ 0.25
SSX2IPQ9Y2D8 KRT90P-201ENST00000549264 1064 ntBASIC16.6■□□□□ 0.25
SSX2IPQ9Y2D8 BLOC1S1-205ENST00000551926 531 ntTSL 5 BASIC16.6■□□□□ 0.25
SSX2IPQ9Y2D8 AC000032.1-201ENST00000562538 491 ntTSL 2 BASIC16.6■□□□□ 0.25
SSX2IPQ9Y2D8 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC16.6■□□□□ 0.25
SSX2IPQ9Y2D8 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC16.6■□□□□ 0.25
SSX2IPQ9Y2D8 AC107373.2-201ENST00000607735 490 ntBASIC16.6■□□□□ 0.25
SSX2IPQ9Y2D8 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
SSX2IPQ9Y2D8 AC008687.7-202ENST00000637404 953 ntBASIC16.6■□□□□ 0.25
SSX2IPQ9Y2D8 OR2I1P-209ENST00000641730 5365 ntBASIC16.6■□□□□ 0.25
SSX2IPQ9Y2D8 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SSX2IPQ9Y2D8 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
SSX2IPQ9Y2D8 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SSX2IPQ9Y2D8 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC16.6■□□□□ 0.25
SSX2IPQ9Y2D8 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SSX2IPQ9Y2D8 NOP9-201ENST00000267425 6033 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SSX2IPQ9Y2D8 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
SSX2IPQ9Y2D8 AL133338.1-201ENST00000565695 1517 ntBASIC16.6■□□□□ 0.25
SSX2IPQ9Y2D8 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC16.6■□□□□ 0.25
SSX2IPQ9Y2D8 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SSX2IPQ9Y2D8 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC16.59■□□□□ 0.25
SSX2IPQ9Y2D8 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC16.59■□□□□ 0.25
SSX2IPQ9Y2D8 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
SSX2IPQ9Y2D8 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC16.59■□□□□ 0.25
SSX2IPQ9Y2D8 KCNMA1-202ENST00000286628 6233 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
SSX2IPQ9Y2D8 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
SSX2IPQ9Y2D8 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC16.59■□□□□ 0.25
SSX2IPQ9Y2D8 LRP8-201ENST00000306052 7648 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
SSX2IPQ9Y2D8 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SSX2IPQ9Y2D8 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
SSX2IPQ9Y2D8 RPP14-202ENST00000445193 7985 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SSX2IPQ9Y2D8 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SSX2IPQ9Y2D8 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SSX2IPQ9Y2D8 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC16.59■□□□□ 0.25
SSX2IPQ9Y2D8 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC16.59■□□□□ 0.25
SSX2IPQ9Y2D8 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC16.59■□□□□ 0.25
SSX2IPQ9Y2D8 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC16.59■□□□□ 0.25
SSX2IPQ9Y2D8 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
SSX2IPQ9Y2D8 AC106760.1-201ENST00000508690 800 ntBASIC16.59■□□□□ 0.25
SSX2IPQ9Y2D8 AP001582.1-201ENST00000525856 295 ntBASIC16.59■□□□□ 0.25
SSX2IPQ9Y2D8 RPL8-205ENST00000527914 551 ntTSL 3 BASIC16.59■□□□□ 0.25
SSX2IPQ9Y2D8 DUX4L45-201ENST00000566406 1057 ntBASIC16.59■□□□□ 0.25
SSX2IPQ9Y2D8 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SSX2IPQ9Y2D8 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC16.59■□□□□ 0.25
SSX2IPQ9Y2D8 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC16.59■□□□□ 0.25
SSX2IPQ9Y2D8 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SSX2IPQ9Y2D8 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 61.3 ms